Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016532 Solanum tuberosum HOM05D001057 ORTHO05D003212 1.1e-87 326.6 169 100.0
Solyc06g066620.4 Solanum lycopersicum HOM05D001057 ORTHO05D003212 1.3e-43 180.3 98 94.9
Sopen06g024890 Solanum pennellii HOM05D001057 ORTHO05D003212 2.2e-43 179.5 98 94.9
CAN.G1152.7 Capsicum annuum HOM05D001057 ORTHO05D003212 3.4e-36 155.6 99 81.8
Nitab4.5_0003351g0010 Nicotiana tabacum HOM05D001057 ORTHO05D003212 2.1e-30 136.3 98 76.5
Nitab4.5_0000351g0110 Nicotiana tabacum HOM05D001057 ORTHO05D003212 4.7e-30 135.2 120 63.3
Peaxi162Scf00207g00944 Petunia axillaris HOM05D001057 ORTHO05D003212 6.4e-27 124.8 98 72.4
vmacro18886 Vaccinium macrocarpon HOM05D001057 ORTHO05D003212 1.1e-18 97.4 99 57.6
Rhsim08G0223600 Rhododendron simsii HOM05D001057 ORTHO05D003212 7.0e-18 94.7 98 54.1
Dinv30479 Davidia involucrata HOM05D001057 ORTHO05D003212 6.0e-17 91.7 98 57.1
Dinv38018 Davidia involucrata HOM05D001057 ORTHO05D003212 3.3e-15 85.9 98 53.1
Cc04_g03020 Coffea canephora HOM05D001057 ORTHO05D003212 4.3e-15 85.5 98 55.1
SGA_v2.0_scaffold68G22981 Striga asiatica HOM05D001057 ORTHO05D003212 4.3e-15 85.5 98 49.0
MSTRG.4739 Avicennia marina HOM05D001057 ORTHO05D003212 5.6e-15 85.1 95 49.5
RcHm_v2.0_Chr7g0217621 Rosa chinensis HOM05D001057 ORTHO05D003212 7.3e-15 84.7 115 46.1
CiPaw.01G235500 Carya illinoinensis HOM05D001057 ORTHO05D003212 1.2e-14 84.0 98 49.0
Manes.11G037700 Manihot esculenta HOM05D001057 ORTHO05D003212 1.2e-14 84.0 98 49.0
QL05p021627 Quercus lobata HOM05D001057 ORTHO05D003212 1.6e-14 83.6 108 49.1
Phvul.010G148600 Phaseolus vulgaris HOM05D001057 ORTHO05D003212 2.1e-14 83.2 98 46.9
GSVIVG01017074001 Vitis vinifera HOM05D001057 ORTHO05D003212 3.6e-14 82.4 98 48.0
Glyma.08G204600 Glycine max HOM05D001057 ORTHO05D003212 4.7e-14 82.0 98 46.9
PSO210G1716 Papaver somniferum HOM05D001057 ORTHO05D003212 4.7e-14 82.0 98 44.9
Sc15g0001360 Simmondsia chinensis HOM05D001057 ORTHO05D003212 4.7e-14 82.0 101 52.5
TPR.G5224 Trifolium pratense HOM05D001057 ORTHO05D003212 6.2e-14 81.6 98 44.9
Prupe.3G066500 Prunus persica HOM05D001057 ORTHO05D003212 8.1e-14 81.3 96 50.0
COL.COLO4_30438 Corchorus olitorius HOM05D001057 ORTHO05D003212 1.8e-13 80.1 99 51.5
Potri.003G052200 Populus trichocarpa HOM05D001057 ORTHO05D003212 1.8e-13 80.1 98 44.9
TAR624G0186 Trochodendron aralioides HOM05D001057 ORTHO05D003212 1.8e-13 80.1 88 48.9
AUR62011665 Chenopodium quinoa HOM05D001057 ORTHO05D003212 2.3e-13 79.7 88 45.5
Migut.D01016 Erythranthe guttata HOM05D001057 ORTHO05D003212 2.3e-13 79.7 102 52.0
FAN04G2611 Fragaria x ananassa HOM05D001057 ORTHO05D003212 2.3e-13 79.7 105 44.8
Glyma.07G019400 Glycine max HOM05D001057 ORTHO05D003212 2.3e-13 79.7 98 42.9
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 3.1e-13 79.3 99 44.4
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 3.1e-13 79.3 99 44.4
EL10Ac9g22033 Beta vulgaris HOM05D001057 ORTHO05D003212 3.1e-13 79.3 68 57.4
FvH4_5g26750 Fragaria vesca HOM05D001057 ORTHO05D003212 3.1e-13 79.3 100 46.0
FAN18G3220 Fragaria x ananassa HOM05D001057 ORTHO05D003212 3.1e-13 79.3 100 46.0
MD09G1209100 Malus domestica HOM05D001057 ORTHO05D003212 3.1e-13 79.3 101 47.5
AUR62016487 Chenopodium quinoa HOM05D001057 ORTHO05D003212 4.0e-13 79.0 63 57.1
Medtr4g013200 Medicago truncatula HOM05D001057 ORTHO05D003212 4.0e-13 79.0 99 45.5
Potri.001G184700 Populus trichocarpa HOM05D001057 ORTHO05D003212 5.2e-13 78.6 115 41.7
VMungo0331G1249 Vigna mungo HOM05D001057 ORTHO05D003212 8.9e-13 77.8 98 44.9
Eucgr.J02957 Eucalyptus grandis HOM05D001057 ORTHO05D003212 1.5e-12 77.0 98 45.9
Hund06631 Selenicereus undatus HOM05D001057 ORTHO05D003212 1.5e-12 77.0 93 48.4
Duzib192G0225 Durio zibethinus HOM05D001057 ORTHO05D003212 2.0e-12 76.6 99 47.5
FAN13G0902 Fragaria x ananassa HOM05D001057 ORTHO05D003212 2.0e-12 76.6 100 46.0
Psat7g250040 Pisum sativum HOM05D001057 ORTHO05D003212 2.0e-12 76.6 98 44.9
THA.LOC104817981 Tarenaya hassleriana HOM05D001057 ORTHO05D003212 2.0e-12 76.6 100 46.0
Aqoxy7G03826 Aquilegia oxysepala HOM05D001057 ORTHO05D003212 2.6e-12 76.3 98 45.9
Ciclev10026714m.g Citrus clementina HOM05D001057 ORTHO05D003212 3.4e-12 75.9 100 49.0
Nn2g11683 Nelumbo nucifera HOM05D001057 ORTHO05D003212 5.8e-12 75.1 98 44.9
FAN08G3370 Fragaria x ananassa HOM05D001057 ORTHO05D003212 7.5e-12 74.7 72 52.8
CSS0002984 Camellia sinensis var. sinensis HOM05D001057 ORTHO05D003212 9.9e-12 74.3 85 47.1
CSS0033442 Camellia sinensis var. sinensis HOM05D001057 ORTHO05D003212 9.9e-12 74.3 62 59.7
CSS0043485 Camellia sinensis var. sinensis HOM05D001057 ORTHO05D003212 9.9e-12 74.3 62 59.7
Gohir.D10G070000 Gossypium hirsutum HOM05D001057 ORTHO05D003212 9.9e-12 74.3 99 48.5
Actinidia32728 Actinidia chinensis HOM05D001057 ORTHO05D003212 1.3e-11 73.9 62 59.7
PSO210G6925 Papaver somniferum HOM05D001057 ORTHO05D003212 1.3e-11 73.9 98 42.9
Atru.chr1.3339 Acer truncatum HOM05D001057 ORTHO05D003212 1.7e-11 73.6 63 57.1
Gorai.011G074300 Gossypium raimondii HOM05D001057 ORTHO05D003212 1.7e-11 73.6 99 47.5
Thecc.06G092700 Theobroma cacao HOM05D001057 ORTHO05D003212 1.7e-11 73.6 99 47.5
Actinidia21683 Actinidia chinensis HOM05D001057 ORTHO05D003212 2.2e-11 73.2 63 61.9
Sed0022313 Sechium edule HOM05D001057 ORTHO05D003212 2.2e-11 73.2 98 42.9
AUR62037812 Chenopodium quinoa HOM05D006463 ORTHO05D002997 6.4e-11 71.6 69 50.7
Lj3g0027497 Lotus japonicus HOM05D001057 ORTHO05D003212 8.3e-11 71.2 98 40.8
Ca_20372_v3 Cicer arietinum L. HOM05D001057 ORTHO05D003212 1.4e-10 70.5 62 54.8
ECA247G0981 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.4e-10 70.5 74 51.4
Gohir.A10G081400 Gossypium hirsutum HOM05D001057 ORTHO05D003212 1.4e-10 70.5 99 46.5
TWI12G1124 Tripterygium wilfordii HOM05D001057 ORTHO05D003212 2.4e-10 69.7 78 48.7
CARHR042350 Cardamine hirsuta HOM05D001057 ORTHO05D003212 4.1e-10 68.9 90 43.3
Nn3g18086 Nelumbo nucifera HOM05D001057 ORTHO05D003212 5.4e-10 68.6 85 42.4
PGR102G2468 Punica granatum HOM05D001057 ORTHO05D003212 5.4e-10 68.6 62 53.2
Lsat_1_v5_gn_1_35260 Lactuca sativa HOM05D001057 ORTHO05D003212 9.2e-10 67.8 107 38.3
SalBow2G2601 Salvia bowleyana HOM05D001577 ORTHO05D003311 6.0e-09 65.1 207 30.0
MELO3C024257.2 Cucumis melo HOM05D001057 ORTHO05D003212 1.3e-08 63.9 99 40.4
CsaV3_7G033430 Cucumis sativus L. HOM05D001057 ORTHO05D003212 1.3e-08 63.9 99 41.4
HanXRQChr04g0096171 Helianthus annuus HOM05D001057 ORTHO05D003212 2.3e-08 63.2 72 45.8
Thhalv10000365m.g Eutrema salsugineum HOM05D001057 ORTHO05D003212 3.0e-08 62.8 90 41.1
CANSAT56G2785 Cannabis sativa HOM05D001057 ORTHO05D003212 3.9e-08 62.4 98 41.8
Sed0011200 Sechium edule HOM05D001057 ORTHO05D003212 3.9e-08 62.4 64 46.9
BolC6t35834H Brassica oleracea HOM05D001057 ORTHO05D003212 5.1e-08 62.0 98 38.8
Lalb_Chr25g0279981 Lupinus albus HOM05D001057 ORTHO05D003212 1.9e-07 60.1 98 41.8
A06p01970 Brassica napus HOM05D001057 ORTHO05D003212 2.5e-07 59.7 89 40.4
C06p07450 Brassica napus HOM05D001057 ORTHO05D003212 2.5e-07 59.7 89 40.4
AT1G52220 Arabidopsis thaliana HOM05D001057 ORTHO05D003212 3.3e-07 59.3 64 43.8
Sp1g38760 Schrenkiella parvula HOM05D001057 ORTHO05D003212 4.3e-07 58.9 89 36.0
BraA06t23413Z Brassica rapa HOM05D001057 ORTHO05D003212 2.1e-06 56.6 94 39.4
AL1G60390 Arabidopsis lyrata HOM05D001057 ORTHO05D003212 2.8e-06 56.2 58 53.4
Carub.0001s4119 Capsella rubella HOM05D001057 ORTHO05D003212 2.8e-06 56.2 72 41.7
Aa31LG10G2690 Aethionema arabicum HOM05D001057 ORTHO05D003212 4.7e-06 55.5 100 41.0


User provided reference genes

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