Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016518 Solanum tuberosum HOM05D001008 ORTHO05D397736 3.4e-73 278.1 129 100.0
Aqoxy7G01188 Aquilegia oxysepala HOM05D001008 ORTHO05D003146 2.0e-12 76.3 75 53.3
Solyc03g121720.2 Solanum lycopersicum HOM05D001008 ORTHO05D003146 3.7e-11 72.0 33 93.9
Sopen03g040530 Solanum pennellii HOM05D001008 ORTHO05D003146 3.7e-11 72.0 33 93.9
PGSC0003DMG400002581 Solanum tuberosum HOM05D001008 ORTHO05D003146 3.7e-11 72.0 33 93.9
PGSC0003DMG400010140 Solanum tuberosum HOM05D001008 ORTHO05D003146 3.7e-11 72.0 33 93.9
Potri.003G040800 Populus trichocarpa HOM05D001008 ORTHO05D003146 6.4e-11 71.2 64 53.1
TAR624G1443 Trochodendron aralioides HOM05D001008 ORTHO05D003146 6.4e-11 71.2 73 50.7
FAN02G2785 Fragaria x ananassa HOM05D001008 ORTHO05D003146 8.3e-11 70.9 73 49.3
FAN02G4483 Fragaria x ananassa HOM05D001008 ORTHO05D003146 8.3e-11 70.9 73 49.3
FAN05G3324 Fragaria x ananassa HOM05D001008 ORTHO05D003146 8.3e-11 70.9 73 49.3
FAN09G2120 Fragaria x ananassa HOM05D001008 ORTHO05D003146 8.3e-11 70.9 73 49.3
Prupe.3G048100 Prunus persica HOM05D001008 ORTHO05D003146 8.3e-11 70.9 73 49.3
MD09G1191900 Malus domestica HOM05D001008 ORTHO05D003146 1.1e-10 70.5 73 49.3
Dinv37904 Davidia involucrata HOM05D001008 ORTHO05D003146 1.4e-10 70.1 55 63.6
Sc12g0010300 Simmondsia chinensis HOM05D001008 ORTHO05D003146 1.4e-10 70.1 73 49.3
RcHm_v2.0_Chr2g0143571 Rosa chinensis HOM05D001008 ORTHO05D003146 1.9e-10 69.7 65 53.8
Ah.08g216410 Amaranthus hybridus HOM05D001215 ORTHO05D003146 2.4e-10 69.3 33 90.9
EL10Ac7g16357 Beta vulgaris HOM05D001008 ORTHO05D003146 2.4e-10 69.3 33 90.9
Cfa003573 Carpinus fangiana HOM05D001008 ORTHO05D003146 2.4e-10 69.3 33 90.9
AUR62009841 Chenopodium quinoa HOM05D001008 ORTHO05D003146 2.4e-10 69.3 33 90.9
Haze_15973 Corylus avellana HOM05D001008 ORTHO05D003146 2.4e-10 69.3 33 90.9
Eucgr.F03139 Eucalyptus grandis HOM05D001008 ORTHO05D003146 2.4e-10 69.3 66 53.0
FvH4_6g33660 Fragaria vesca HOM05D001008 ORTHO05D003146 2.4e-10 69.3 73 47.9
FAN14G0960 Fragaria x ananassa HOM05D001008 ORTHO05D003146 2.4e-10 69.3 73 47.9
Manes.11G025200 Manihot esculenta HOM05D001008 ORTHO05D003146 2.4e-10 69.3 33 90.9
SalBow7G3878 Salvia bowleyana HOM05D001008 ORTHO05D003146 2.4e-10 69.3 33 90.9
Hund20832 Selenicereus undatus HOM05D001008 ORTHO05D003146 2.4e-10 69.3 33 90.9
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 3.2e-10 68.9 33 90.9
Migut.D00963 Erythranthe guttata HOM05D001008 ORTHO05D003146 3.2e-10 68.9 33 87.9
CiPaw.01G223700 Carya illinoinensis HOM05D001008 ORTHO05D003146 5.4e-10 68.2 33 84.8
Ciclev10025937m.g Citrus clementina HOM05D001008 ORTHO05D003146 5.4e-10 68.2 33 87.9
Nn8g38818 Nelumbo nucifera HOM05D001008 ORTHO05D003146 5.4e-10 68.2 33 87.9
Oeu039952.1 Olea europaea HOM05D001008 ORTHO05D003146 5.4e-10 68.2 33 87.9
GSVIVG01016871001 Vitis vinifera HOM05D001008 ORTHO05D003146 5.4e-10 68.2 33 87.9
Zm00001eb160170 Zea mays HOM05D001008 ORTHO05D003146 5.4e-10 68.2 73 47.9
HanXRQChr10g0312421 Helianthus annuus HOM05D001008 ORTHO05D003146 7.0e-10 67.8 33 87.9
Rhsim12G0207300 Rhododendron simsii HOM05D001008 ORTHO05D003146 7.0e-10 67.8 33 87.9
AT1G17650 Arabidopsis thaliana HOM05D001008 ORTHO05D003146 9.2e-10 67.4 33 84.8
BcaC05g25687 Brassica carinata HOM05D001008 ORTHO05D003146 9.2e-10 67.4 55 60.0
CSS0040901 Camellia sinensis var. sinensis HOM05D001008 ORTHO05D003146 9.2e-10 67.4 33 87.9
Carub.0001s1739 Capsella rubella HOM05D001008 ORTHO05D003146 9.2e-10 67.4 33 84.8
AUR62038153 Chenopodium quinoa HOM05D001008 ORTHO05D003146 9.2e-10 67.4 33 87.9
Duzib192G1021 Durio zibethinus HOM05D001008 ORTHO05D003146 9.2e-10 67.4 33 90.9
Actinidia09037 Actinidia chinensis HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 84.8
CARHR018260 Cardamine hirsuta HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 84.8
Ca_01209_v3 Cicer arietinum L. HOM05D001008 ORTHO05D003146 1.2e-09 67.0 73 47.9
Cc04_g01810 Coffea canephora HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 81.8
COL.COLO4_30658 Corchorus olitorius HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 84.8
ECA234G0489 Erigeron canadensis HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 84.8
Gohir.D10G060900 Gossypium hirsutum HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 87.9
Gorai.011G065100 Gossypium raimondii HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 87.9
PGR119G0450 Punica granatum HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 87.9
QL05p011285 Quercus lobata HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 87.9
QL05p011666 Quercus lobata HOM05D001008 ORTHO05D003146 1.2e-09 67.0 33 87.9
BcaB07g34022 Brassica carinata HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 81.8
A06p13550 Brassica napus HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 81.8
C05p16060 Brassica napus HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 81.8
BolC5t30307H Brassica oleracea HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 81.8
BraA06t24507Z Brassica rapa HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 81.8
MELO3C013091.2 Cucumis melo HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 84.8
CsaV3_3G043770 Cucumis sativus L. HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 84.8
Sed0018794 Sechium edule HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 84.8
vmacro17033 Vaccinium macrocarpon HOM05D001008 ORTHO05D003146 1.6e-09 66.6 33 84.8
DCAR_007628 Daucus carota HOM05D001008 ORTHO05D003146 2.0e-09 66.2 33 84.8
TPR.G6595 Trifolium pratense HOM05D001008 ORTHO05D003146 2.0e-09 66.2 73 47.9
Aa31LG7G2490 Aethionema arabicum HOM05D001008 ORTHO05D003146 2.7e-09 65.9 33 84.8
ATR0026G044 Amborella trichopoda HOM05D001008 ORTHO05D003146 2.7e-09 65.9 33 81.8
Lsat_1_v5_gn_5_135081 Lactuca sativa HOM05D001008 ORTHO05D003146 2.7e-09 65.9 33 84.8
Lj5A43T68 Lonicera japonica HOM05D001008 ORTHO05D003146 2.7e-09 65.9 73 46.6
PSO063G2064 Papaver somniferum HOM05D001008 ORTHO05D003146 2.7e-09 65.9 33 81.8
AL1G29980 Arabidopsis lyrata HOM05D001008 ORTHO05D003146 3.5e-09 65.5 33 81.8
MSTRG.9501 Avicennia marina HOM05D001008 ORTHO05D003146 4.6e-09 65.1 33 87.9
arahy.Tifrunner.gnm1.ann1.KWZP7D Arachis hypogaea HOM05D001008 ORTHO05D003146 6.0e-09 64.7 73 45.2
ClCG07G013820 Citrullus lanatus HOM05D001008 ORTHO05D003146 6.0e-09 64.7 33 84.8
Nitab4.5_0001295g0230 Nicotiana tabacum HOM05D001008 ORTHO05D003146 6.0e-09 64.7 33 84.8
SEGI_08889 Sequoiadendron giganteum HOM05D001008 ORTHO05D003146 6.0e-09 64.7 73 43.8
TWI79G1331 Tripterygium wilfordii HOM05D001008 ORTHO05D003146 6.0e-09 64.7 73 45.2
Gohir.A10G059300 Gossypium hirsutum HOM05D001008 ORTHO05D003146 7.8e-09 64.3 33 84.8
Medtr2g099910 Medicago truncatula HOM05D001008 ORTHO05D003146 7.8e-09 64.3 73 47.9
Sabra03G0023600 Salix brachista HOM05D001215 ORTHO05D003146 7.8e-09 64.3 33 81.8
arahy.Tifrunner.gnm1.ann1.RQ1G66 Arachis hypogaea HOM05D001008 ORTHO05D003146 1.0e-08 63.9 73 45.2
HPP92_022909 Vanilla planifolia HOM05D001008 ORTHO05D003146 1.0e-08 63.9 64 46.9
Lj3g0027689 Lotus japonicus HOM05D001008 ORTHO05D003146 1.3e-08 63.5 33 81.8
Os01g0574600 Oryza sativa ssp. japonica HOM05D001008 ORTHO05D003146 1.3e-08 63.5 64 48.4
Psat5g292160 Pisum sativum HOM05D001008 ORTHO05D003146 1.7e-08 63.2 73 46.6
MELO3C013093.2 Cucumis melo HOM05D001008 ORTHO05D003146 2.3e-08 62.8 33 81.8
CsaV3_3G043780 Cucumis sativus L. HOM05D001008 ORTHO05D003146 2.3e-08 62.8 33 81.8
PSO832G1576 Papaver somniferum HOM05D001008 ORTHO05D003146 2.3e-08 62.8 33 78.8
VMungo1080G1613 Vigna mungo HOM05D001008 ORTHO05D003146 3.0e-08 62.4 33 78.8
CANSAT56G2572 Cannabis sativa HOM05D001008 ORTHO05D003146 5.0e-08 61.6 33 84.8
Glyma.13G349100 Glycine max HOM05D001008 ORTHO05D003146 5.0e-08 61.6 33 78.8
Phvul.005G158300 Phaseolus vulgaris HOM05D001008 ORTHO05D003146 5.0e-08 61.6 33 78.8
Sp1g15760 Schrenkiella parvula HOM05D001008 ORTHO05D003146 1.1e-07 60.5 33 75.8
Lalb_Chr14g0372761 Lupinus albus HOM05D001008 ORTHO05D003146 2.5e-07 59.3 73 42.5
Sed0008114 Sechium edule HOM05D001008 ORTHO05D003146 7.3e-07 57.8 33 75.8


User provided reference genes

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