Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.1e-57 226.5 121 100.0
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 6.3e-53 210.7 121 91.7
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 3.1e-52 208.4 121 90.9
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.5e-46 189.5 121 77.7
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 6.3e-37 157.5 121 68.6
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 9.5e-33 143.7 109 68.8
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.7e-29 132.9 116 58.6
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.7e-29 131.7 119 52.9
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.5e-25 119.8 114 51.8
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.5e-25 119.8 114 52.6
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.5e-25 119.8 115 53.9
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.7e-24 114.8 111 50.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 6.2e-24 114.4 111 50.5
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.2e-22 110.2 109 49.5
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.5e-22 109.8 107 49.5
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.0e-22 109.4 109 49.5
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 3.4e-22 108.6 106 50.9
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.3e-21 106.7 109 46.8
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.7e-21 105.1 114 48.2
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.7e-21 105.1 114 48.2
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 4.9e-21 104.8 109 48.6
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 6.4e-21 104.4 113 50.4
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 8.3e-21 104.0 112 47.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.4e-20 102.4 113 46.9
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.2e-20 102.1 111 46.8
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.1e-20 101.7 113 46.0
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.1e-20 101.7 113 46.0
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.5e-19 98.6 111 44.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.5e-19 98.6 111 45.9
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 6.0e-19 97.8 116 41.4
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.3e-18 96.7 111 47.7
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.3e-18 96.7 111 45.0
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.7e-18 96.3 111 42.3
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 2.3e-18 95.9 113 46.0
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 3.9e-18 95.1 125 41.6
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 5.0e-18 94.7 119 50.4
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 5.0e-18 94.7 113 39.8
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.1e-17 93.6 114 46.5
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.5e-17 93.2 113 46.9
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.5e-17 93.2 109 45.0
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.9e-17 92.8 110 41.8
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.9e-17 92.8 118 44.1
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 4.3e-17 91.7 110 44.5
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.3e-17 91.7 112 45.5
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 5.6e-17 91.3 113 42.5
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 7.3e-17 90.9 107 48.6
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.3e-17 90.9 111 42.3
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 9.5e-17 90.5 112 44.6
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-16 90.1 107 48.6
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.2e-16 90.1 114 41.2
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.6e-16 89.7 109 46.8
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.6e-16 89.7 113 45.1
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 1.6e-16 89.7 113 45.1
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 3.6e-16 88.6 114 44.7
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 4.7e-16 88.2 110 42.7
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 4.7e-16 88.2 123 43.1
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 8.1e-16 87.4 107 44.9
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.1e-15 87.0 107 47.7
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.1e-15 87.0 110 42.7
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.8e-15 86.3 109 43.1
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.8e-15 86.3 114 40.4
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 3.1e-15 85.5 114 43.9
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 5.2e-15 84.7 109 43.1
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 8.9e-15 84.0 114 43.0
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.5e-14 83.2 110 44.5
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 3.4e-14 82.0 116 41.4
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 3.4e-14 82.0 116 41.4
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 4.4e-14 81.6 121 38.8
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.4e-14 81.6 107 43.9
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 5.8e-14 81.3 127 41.7
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 5.8e-14 81.3 119 40.3
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 5.8e-14 81.3 112 42.9
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 7.5e-14 80.9 115 44.3
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 9.8e-14 80.5 113 41.6
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.7e-13 79.7 104 42.3
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 1.7e-13 79.7 114 39.5
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 2.2e-13 79.3 131 38.2
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.9e-13 79.0 105 39.0
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 2.9e-13 79.0 109 38.5
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 2.9e-13 79.0 115 42.6
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.7e-13 78.6 109 40.4
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 4.9e-13 78.2 113 38.9
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 4.9e-13 78.2 114 40.4
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 8.3e-13 77.4 117 38.5
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 8.3e-13 77.4 113 40.7
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.1e-12 77.0 109 36.7
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.1e-12 77.0 115 37.4
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.4e-12 75.9 111 39.6
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 3.2e-12 75.5 115 40.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 4.1e-12 75.1 114 37.7
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.1e-12 74.3 113 35.4
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.1e-12 74.3 113 35.4
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.2e-12 73.9 117 36.8
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 1.2e-11 73.6 117 38.5
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.2e-11 73.6 118 39.8
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.2e-11 73.6 117 36.8
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.6e-11 73.2 114 35.1
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.6e-11 73.2 114 35.1
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 2.1e-11 72.8 109 37.6
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.1e-11 72.8 109 35.8
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 2.1e-11 72.8 114 43.0
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 2.7e-11 72.4 117 37.6
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.7e-11 72.4 109 40.4
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.7e-11 72.4 109 40.4
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.5e-11 72.0 107 37.4
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.5e-11 72.0 114 42.1
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.6e-11 71.6 114 35.1
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 6.0e-11 71.2 109 38.5
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 6.0e-11 71.2 118 35.6
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.3e-10 70.1 94 41.5
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 1.3e-10 70.1 106 37.7
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.3e-10 70.1 107 43.0
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 1.3e-10 70.1 109 38.5
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.3e-10 70.1 107 41.1
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.3e-10 69.3 112 36.6
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.9e-10 68.6 109 40.4
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.1e-10 68.2 109 35.8
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 6.6e-10 67.8 110 37.3
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 6.6e-10 67.8 114 36.8
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 1.1e-09 67.0 115 34.8
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.9e-09 66.2 118 32.2
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 1.9e-09 66.2 107 40.2
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.5e-09 65.9 109 38.5
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.5e-09 65.9 141 31.2
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 3.3e-09 65.5 118 33.1
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.3e-09 65.1 113 36.3
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 4.3e-09 65.1 116 36.2
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 5.6e-09 64.7 116 37.1
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 9.5e-09 63.9 113 35.4
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 9.5e-09 63.9 121 35.5
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 9.5e-09 63.9 114 32.5
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 1.2e-08 63.5 84 44.0
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 2.8e-08 62.4 112 33.9
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 2.8e-08 62.4 133 33.8
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 3.6e-08 62.0 113 37.2
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 4.7e-08 61.6 111 42.3
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 2.3e-07 59.3 118 34.7
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.3e-07 59.3 117 35.0
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 2.3e-07 59.3 118 34.7
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 2.3e-07 59.3 118 34.7
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 9.9e-06 53.9 74 39.2


User provided reference genes

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