Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 6.3e-211 737.3 394 100.0
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 1.4e-69 267.7 146 90.4
Sopen05g024890 Solanum pennellii HOM05D000541 ORTHO05D000137 1.2e-65 254.6 238 66.0
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 1.8e-64 250.8 147 83.7
Sopen02g010860 Solanum pennellii HOM05D000541 ORTHO05D000137 5.4e-61 239.2 225 65.3
Sopen07g023480 Solanum pennellii HOM05D000541 ORTHO05D000137 3.0e-59 233.4 228 59.6
Sopen08g017460 Solanum pennellii HOM05D000541 ORTHO05D000137 3.9e-59 233.0 228 59.6
Sopen01g037260 Solanum pennellii HOM05D000541 ORTHO05D000137 1.9e-58 230.7 227 59.5
Sopen11g029170 Solanum pennellii HOM05D000541 ORTHO05D000137 1.9e-58 230.7 227 59.5
Sopen03g030640 Solanum pennellii HOM05D005797 ORTHO05D006479 7.3e-58 228.8 227 59.9
Sopen06g004070 Solanum pennellii HOM05D000541 ORTHO05D000137 2.3e-56 223.8 227 63.4
Sopen09g012330 Solanum pennellii HOM05D000541 ORTHO05D000137 4.1e-53 213.0 225 58.7
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 6.0e-52 209.1 147 68.7
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 7.8e-52 208.8 101 99.0
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 1.5e-50 204.5 147 69.4
Sopen03g020010 Solanum pennellii HOM05D000679 ORTHO05D000137 1.9e-50 204.1 239 57.3
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 4.3e-50 203.0 161 64.6
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 1.2e-49 201.4 159 66.0
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 5.2e-48 196.1 148 67.6
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 8.9e-48 195.3 133 69.9
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 8.9e-48 195.3 133 69.9
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 8.9e-48 195.3 148 66.2
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.2e-47 194.9 148 66.2
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 3.4e-47 193.4 147 67.3
Sopen06g003830 Solanum pennellii HOM05D000541 ORTHO05D000137 9.9e-47 191.8 180 66.7
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 2.2e-46 190.7 148 66.2
Sopen05g027310 Solanum pennellii HOM05D000541 ORTHO05D000137 4.9e-46 189.5 243 49.0
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 6.4e-46 189.1 147 65.3
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 3.2e-45 186.8 147 63.9
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 3.2e-45 186.8 149 65.1
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 4.2e-45 186.4 147 64.6
Sopen05g024400 Solanum pennellii HOM05D000541 ORTHO05D000137 5.4e-45 186.0 227 56.8
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 7.1e-45 185.7 119 73.1
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 7.1e-45 185.7 149 65.1
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 1.2e-44 184.9 148 64.9
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 2.7e-44 183.7 117 73.5
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 3.5e-44 183.3 123 74.8
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 3.5e-44 183.3 123 74.8
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 3.5e-44 183.3 150 64.0
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 3.5e-44 183.3 151 65.6
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 6.0e-44 182.6 149 63.1
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 6.0e-44 182.6 149 63.1
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 1.0e-43 181.8 116 75.9
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 1.3e-43 181.4 148 62.8
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 1.3e-43 181.4 121 73.6
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 1.3e-43 181.4 118 74.6
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.7e-43 181.0 117 73.5
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 2.3e-43 180.6 108 80.6
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 2.3e-43 180.6 148 63.5
PGSC0003DMG400007270 Solanum tuberosum HOM05D000679 ORTHO05D000482 2.3e-43 180.6 148 70.9
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 3.9e-43 179.9 149 63.8
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 5.1e-43 179.5 150 62.0
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 6.6e-43 179.1 149 61.7
Sopen10g019920 Solanum pennellii HOM05D000541 ORTHO05D000137 6.6e-43 179.1 186 64.0
Sopen10g022900 Solanum pennellii HOM05D000011 ORTHO05D000137 6.6e-43 179.1 228 53.9
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 1.5e-42 177.9 137 64.2
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 2.5e-42 177.2 151 61.6
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 3.3e-42 176.8 173 57.2
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 7.3e-42 175.6 148 60.8
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 9.6e-42 175.3 102 82.4
PGSC0003DMG400047122 Solanum tuberosum HOM05D000541 ORTHO05D000137 9.6e-42 175.3 187 55.1
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 1.2e-41 174.9 137 67.2
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 1.2e-41 174.9 147 61.2
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 4.7e-41 172.9 116 73.3
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 6.2e-41 172.6 117 70.1
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 1.4e-40 171.4 126 69.0
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 2.4e-40 170.6 150 60.0
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 4.0e-40 169.9 150 61.3
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 4.0e-40 169.9 150 62.0
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 4.0e-40 169.9 150 62.0
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 6.9e-40 169.1 156 63.5
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 9.0e-40 168.7 115 70.4
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 1.2e-39 168.3 150 61.3
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 1.2e-39 168.3 150 61.3
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.2e-39 168.3 115 69.6
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 2.0e-39 167.5 150 59.3
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 3.4e-39 166.8 115 69.6
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 3.4e-39 166.8 119 68.1
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 5.8e-39 166.0 150 60.0
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 7.6e-39 165.6 109 73.4
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 7.6e-39 165.6 115 69.6
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 9.9e-39 165.2 167 56.9
Solyc00g500352.1 Solanum lycopersicum HOM05D000541 ORTHO05D026152 1.7e-38 164.5 144 63.9
PGSC0003DMG400016447 Solanum tuberosum HOM05D000541 ORTHO05D017123 2.9e-38 163.7 195 55.9
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 3.8e-38 163.3 103 75.7
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 4.9e-38 162.9 127 63.0
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 4.9e-38 162.9 143 60.8
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 1.1e-37 161.8 118 66.1
Sopen12g015350 Solanum pennellii HOM05D000541 ORTHO05D000137 1.1e-37 161.8 227 47.6
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 4.2e-37 159.8 134 61.2
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 4.2e-37 159.8 126 65.9
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 5.4e-37 159.5 99 78.8
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 4.6e-36 156.4 114 65.8
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 1.3e-35 154.8 152 55.9
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 1.3e-35 154.8 210 47.1
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 3.3e-34 150.2 106 67.9
Sopen04g019360 Solanum pennellii HOM05D000004 ORTHO05D000002 5.6e-34 149.4 155 63.9
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 2.8e-33 147.1 131 60.3
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 4.8e-33 146.4 141 55.3
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 4.0e-32 143.3 102 67.6
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 4.0e-32 143.3 163 51.5
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 1.5e-31 141.4 126 61.1
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 1.7e-30 137.9 130 57.7
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 2.9e-30 137.1 102 64.7
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 4.9e-30 136.3 120 59.2
PGSC0003DMG400011887 Solanum tuberosum HOM05D000541 ORTHO05D000137 4.9e-30 136.3 210 50.0
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 5.4e-29 132.9 122 58.2
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 7.1e-29 132.5 101 62.4
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 9.3e-29 132.1 82 80.5
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 1.2e-28 131.7 136 55.1
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 2.1e-28 131.0 98 63.3
PGSC0003DMG400038255 Solanum tuberosum HOM05D000541 ORTHO05D000137 4.6e-28 129.8 100 69.0
PGSC0003DMG400037440 Solanum tuberosum HOM05D000541 ORTHO05D000137 2.3e-27 127.5 150 52.0
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 3.0e-27 127.1 119 56.3
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 2.5e-26 124.0 92 66.3
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 3.3e-26 123.6 85 70.6
PGSC0003DMG400042469 Solanum tuberosum HOM05D000541 ORTHO05D000137 9.6e-26 122.1 231 42.0
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 1.4e-24 118.2 122 53.3
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 3.1e-24 117.1 67 80.6
PGSC0003DMG400020014 Solanum tuberosum HOM05D000541 ORTHO05D000137 2.0e-23 114.4 233 42.5
PGSC0003DMG400014993 Solanum tuberosum HOM05D000541 ORTHO05D000137 3.4e-23 113.6 259 43.6
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 3.9e-19 100.1 89 58.4
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 5.1e-19 99.8 89 59.6
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 2.0e-15 87.8 117 43.6
Sopen07g019810 Solanum pennellii HOM05D000541 ORTHO05D000137 4.5e-15 86.7 79 58.2
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 5.8e-15 86.3 150 40.7
Sopen04g013050 Solanum pennellii HOM05D000541 ORTHO05D000137 1.0e-14 85.5 92 52.2
PGSC0003DMG400038850 Solanum tuberosum HOM05D000541 ORTHO05D000137 2.9e-14 84.0 92 47.8
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 6.5e-14 82.8 113 41.6
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 9.3e-13 79.0 48 75.0
PGSC0003DMG400004494 Solanum tuberosum HOM05D000541 ORTHO05D012255 9.3e-13 79.0 245 27.8
Sopen04g023790 Solanum pennellii HOM05D000541 ORTHO05D000137 1.8e-11 74.7 57 64.9
Sopen07g021540 Solanum pennellii HOM05D000541 ORTHO05D000137 8.7e-11 72.4 219 35.6
Solyc10g150138.1 Solanum lycopersicum HOM05D000541 ORTHO05D008871 1.9e-10 71.2 54 64.8
PGSC0003DMG400030095 Solanum tuberosum HOM05D000541 ORTHO05D012255 1.9e-10 71.2 247 27.5
Sopen10g022220 Solanum pennellii HOM05D000541 ORTHO05D000137 7.4e-10 69.3 208 34.6
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 1.6e-09 68.2 109 37.6
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 2.8e-09 67.4 84 50.0
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 6.3e-09 66.2 144 32.6
Solyc01g080740.1 Solanum lycopersicum HOM05D000541 ORTHO05D012255 6.3e-09 66.2 221 29.9
PGSC0003DMG400016701 Solanum tuberosum HOM05D000541 ORTHO05D012255 1.1e-08 65.5 242 28.1
Sopen00g005350 Solanum pennellii HOM05D000541 ORTHO05D000137 1.4e-08 65.1 208 33.7
Sopen06g019000 Solanum pennellii HOM05D000541 ORTHO05D000137 1.4e-08 65.1 208 29.8
Sopen06g006610 Solanum pennellii HOM05D000541 ORTHO05D000137 2.4e-08 64.3 205 32.2
Sopen08g016200 Solanum pennellii HOM05D000541 ORTHO05D000137 2.4e-08 64.3 208 31.7
Sopen02g001060 Solanum pennellii HOM05D000541 ORTHO05D000137 4.1e-08 63.5 233 30.9
Sopen02g032120 Solanum pennellii HOM05D000541 ORTHO05D000137 4.1e-08 63.5 233 30.9
Solyc05g150112.1 Solanum lycopersicum HOM05D000541 ORTHO05D017123 1.2e-07 62.0 61 55.7
Sopen01g027580 Solanum pennellii HOM05D000006 ORTHO05D000001 2.0e-07 61.2 225 27.1
Sopen06g004340 Solanum pennellii HOM05D000541 ORTHO05D000137 2.0e-07 61.2 208 31.2
Sopen10g006880 Solanum pennellii HOM05D000541 ORTHO05D000137 2.0e-07 61.2 59 52.5
Solyc12g036280.1 Solanum lycopersicum HOM05D000541 ORTHO05D026152 2.2e-06 57.8 62 53.2
Solyc08g016437.1 Solanum lycopersicum HOM05D000541 ORTHO05D026152 5.0e-06 56.6 115 38.3
Sopen12g009650 Solanum pennellii HOM05D000541 ORTHO05D012255 6.5e-06 56.2 233 27.0


User provided reference genes

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