Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016421 Solanum tuberosum HOM05D012176 ORTHO05D014468 3.6e-152 541.6 276 100.0
Nitab4.5_0000020g0110 Nicotiana tabacum HOM05D012176 ORTHO05D014468 4.4e-86 322.0 288 60.8
Nitab4.5_0002958g0020 Nicotiana tabacum HOM05D012176 ORTHO05D014468 3.0e-82 309.3 286 60.8
Sopen01g003190 Solanum pennellii HOM05D012176 ORTHO05D014468 6.0e-75 285.0 157 87.9
CAN.G574.24 Capsicum annuum HOM05D012176 ORTHO05D014468 1.7e-37 160.6 167 47.9
Solyc01g007210.3 Solanum lycopersicum HOM05D012176 ORTHO05D014468 4.0e-18 96.3 62 82.3
MSTRG.5900 Avicennia marina HOM05D012176 ORTHO05D014468 1.7e-16 90.9 263 26.2
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 2.2e-16 90.5 182 28.0
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 3.1e-15 86.7 252 29.0
Dinv31752 Davidia involucrata HOM05D002687 ORTHO05D022209 9.1e-15 85.1 174 32.2
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 3.5e-14 83.2 248 25.4
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 1.1e-12 78.2 192 28.1
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.7e-11 73.6 189 25.4
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 4.7e-11 72.8 263 23.2
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 6.1e-11 72.4 192 26.6
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 1.0e-10 71.6 179 27.4
MSTRG.19312 Avicennia marina HOM05D012176 ORTHO05D014468 1.4e-10 71.2 268 22.8
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.4e-10 71.2 193 25.9
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.4e-10 71.2 176 28.4
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.8e-10 70.9 165 26.7
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 3.0e-10 70.1 185 30.8
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 4.0e-10 69.7 193 26.4
Cc06_g06470 Coffea canephora HOM05D022101 ORTHO05D022209 6.8e-10 68.9 215 28.4
Migut.B00865 Erythranthe guttata HOM05D012176 ORTHO05D014468 6.8e-10 68.9 184 25.5
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 8.8e-10 68.6 191 25.7
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 1.2e-09 68.2 186 24.7
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 1.2e-09 68.2 285 26.3
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 2.6e-09 67.0 257 24.5
DCAR_003063 Daucus carota HOM05D008136 ORTHO05D014468 4.4e-09 66.2 196 23.5
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 4.4e-09 66.2 184 22.8
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 5.7e-09 65.9 173 26.6
Actinidia32046 Actinidia chinensis HOM05D000182 ORTHO05D000112 1.3e-08 64.7 199 25.6
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 1.3e-08 64.7 158 22.8
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 1.3e-08 64.7 194 24.7
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 2.2e-08 63.9 272 24.3
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 2.2e-08 63.9 228 26.3
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 2.8e-08 63.5 218 22.5
CARHR119770 Cardamine hirsuta HOM05D002687 ORTHO05D002052 3.7e-08 63.2 202 23.8
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 3.7e-08 63.2 180 28.3
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 6.3e-08 62.4 216 25.0
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 8.3e-08 62.0 199 24.6
Solyc11g068893.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.1e-07 61.6 162 27.8
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.8e-07 60.8 194 24.2
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 3.1e-07 60.1 170 25.9
Lj5g0011569 Lotus japonicus HOM05D008136 ORTHO05D002052 3.1e-07 60.1 191 24.1
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 3.1e-07 60.1 206 23.3
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 4.1e-07 59.7 205 21.0
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 7.0e-07 58.9 240 24.2
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 2.0e-06 57.4 172 25.6
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 2.0e-06 57.4 232 24.6
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 2.7e-06 57.0 185 24.3
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 3.5e-06 56.6 214 23.4
PGSC0003DMG400041735 Solanum tuberosum HOM05D019896 ORTHO05D020311 4.5e-06 56.2 138 27.5


User provided reference genes

Program Settings