Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 2.2e-83 312.4 175 100.0
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.1e-79 300.1 175 95.4
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 7.4e-79 297.4 175 94.9
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 5.0e-59 231.5 178 76.4
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.9e-58 229.6 178 76.4
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 9.8e-31 137.5 182 56.0
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.0e-28 129.8 171 46.8
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 7.8e-28 127.9 171 45.0
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 3.0e-27 125.9 185 44.3
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 8.6e-27 124.4 176 44.9
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 8.6e-27 124.4 164 47.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 4.3e-26 122.1 162 43.8
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 5.6e-26 121.7 168 49.4
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 7.3e-26 121.3 170 44.1
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.1e-25 119.8 169 46.7
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 2.1e-25 119.8 172 44.8
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.1e-25 119.8 175 43.4
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 8.1e-25 117.9 164 47.0
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 2.3e-24 116.3 181 44.8
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 4.0e-24 115.5 164 47.0
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 5.2e-24 115.2 182 45.6
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 6.8e-24 114.8 180 52.8
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.0e-23 113.2 158 45.6
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 2.6e-23 112.8 184 41.8
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 3.4e-23 112.5 165 56.4
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 7.5e-23 111.3 181 42.0
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 7.5e-23 111.3 175 50.3
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 9.8e-23 110.9 166 45.2
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 1.3e-22 110.5 171 52.0
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.3e-22 110.5 161 40.4
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 1.3e-22 110.5 130 56.2
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 6.4e-22 108.2 170 51.2
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 8.3e-22 107.8 188 42.6
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 3.2e-21 105.9 178 41.6
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 5.4e-21 105.1 173 43.9
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.2e-20 104.0 130 46.9
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.1e-20 103.2 182 42.9
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 2.7e-20 102.8 162 39.5
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 3.5e-20 102.4 172 41.3
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 2.3e-19 99.8 169 40.8
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 3.0e-19 99.4 129 51.2
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 3.9e-19 99.0 180 38.9
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 3.9e-19 99.0 174 40.8
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 6.6e-19 98.2 118 50.0
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.5e-18 97.1 176 39.8
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.9e-18 96.7 179 40.2
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 3.3e-18 95.9 180 47.2
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 4.3e-18 95.5 138 51.4
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 4.3e-18 95.5 106 51.9
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 5.6e-18 95.1 127 48.8
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 3.6e-17 92.4 86 62.8
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 3.6e-17 92.4 158 41.1
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 1.4e-16 90.5 78 57.7
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 1.4e-16 90.5 115 47.0
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 5.2e-16 88.6 154 44.2
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 5.2e-16 88.6 159 40.3
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.2e-15 87.4 102 51.0
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 2.0e-15 86.7 176 40.9
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 2.0e-15 86.7 165 40.0
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 3.4e-15 85.9 104 50.0
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 4.4e-15 85.5 163 40.5
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 7.6e-15 84.7 164 39.6
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 9.9e-15 84.3 110 49.1
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 2.2e-14 83.2 179 39.7
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 2.2e-14 83.2 178 41.6
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 3.7e-14 82.4 141 44.0
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 4.9e-14 82.0 162 38.9
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 4.9e-14 82.0 83 57.8
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 6.4e-14 81.6 119 45.4
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 8.4e-14 81.3 126 45.2
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.4e-13 80.5 140 42.9
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.4e-13 80.5 140 42.9
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 2.4e-13 79.7 164 41.5
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 2.4e-13 79.7 174 36.8
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 3.2e-13 79.3 180 36.7
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 3.2e-13 79.3 111 47.7
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 4.1e-13 79.0 107 50.5
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 5.4e-13 78.6 129 38.8
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 5.4e-13 78.6 82 54.9
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.4e-13 78.6 82 54.9
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 1.6e-12 77.0 122 44.3
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 1.6e-12 77.0 175 37.7
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 2.7e-12 76.3 175 37.7
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 3.5e-12 75.9 168 36.3
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 3.5e-12 75.9 173 37.0
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 4.6e-12 75.5 174 36.8
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 4.6e-12 75.5 108 48.1
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 6.0e-12 75.1 103 42.7
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 1.0e-11 74.3 140 42.1
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 1.0e-11 74.3 104 47.1
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 1.0e-11 74.3 154 34.4
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.3e-11 73.9 127 43.3
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 2.3e-11 73.2 75 49.3
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 2.3e-11 73.2 167 37.1
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 2.3e-11 73.2 103 44.7
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 3.0e-11 72.8 119 40.3
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 3.0e-11 72.8 173 35.3
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 3.9e-11 72.4 91 39.6
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 5.1e-11 72.0 126 38.1
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 5.1e-11 72.0 110 45.5
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 5.1e-11 72.0 134 44.8
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 8.6e-11 71.2 120 39.2
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 2.5e-10 69.7 80 48.8
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 3.3e-10 69.3 110 43.6
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 5.6e-10 68.6 176 34.1
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 5.6e-10 68.6 95 48.4
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 7.3e-10 68.2 162 35.2
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 7.3e-10 68.2 84 47.6
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 7.3e-10 68.2 83 41.0
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 9.6e-10 67.8 79 48.1
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 1.2e-09 67.4 111 37.8
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 1.2e-09 67.4 75 48.0
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 1.2e-09 67.4 80 47.5
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.1e-09 66.6 73 53.4
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 2.1e-09 66.6 77 49.4
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 2.8e-09 66.2 141 36.9
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 2.8e-09 66.2 71 49.3
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.8e-09 66.2 71 49.3
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.8e-09 66.2 71 49.3
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 3.6e-09 65.9 152 35.5
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 8.1e-09 64.7 138 37.0
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 8.1e-09 64.7 65 52.3
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 1.1e-08 64.3 75 45.3
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 1.4e-08 63.9 84 47.6
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 1.4e-08 63.9 72 48.6
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.4e-08 63.9 105 45.7
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 1.8e-08 63.5 156 35.3
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 2.4e-08 63.2 88 42.0
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.0e-08 62.4 71 47.9
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 4.0e-08 62.4 73 47.9
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 5.2e-08 62.0 100 42.0
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 6.8e-08 61.6 112 38.4
QL01p011372 Quercus lobata HOM05D021165 ORTHO05D006261 6.8e-08 61.6 105 37.1
QL01p011630 Quercus lobata HOM05D021165 ORTHO05D006261 6.8e-08 61.6 105 37.1
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 6.8e-08 61.6 74 47.3
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 8.9e-08 61.2 75 46.7
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 1.2e-07 60.8 81 43.2
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.2e-07 60.8 70 44.3
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 1.2e-07 60.8 119 35.3
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.5e-07 60.5 75 45.3
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.5e-07 60.5 75 45.3
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 2.0e-07 60.1 75 46.7
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 2.6e-07 59.7 123 33.3
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 2.6e-07 59.7 72 44.4
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 4.4e-07 58.9 68 48.5
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 5.8e-07 58.5 75 44.0
Ciclev10029945m.g Citrus clementina HOM05D021165 ORTHO05D006261 5.8e-07 58.5 105 37.1
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 5.8e-07 58.5 82 40.2
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 7.6e-07 58.2 94 41.5
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 9.9e-07 57.8 82 40.2
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 9.9e-07 57.8 81 44.4
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 9.9e-07 57.8 46 58.7
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.3e-06 57.4 89 39.3
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.3e-06 57.4 89 39.3
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 1.3e-06 57.4 106 35.8
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.3e-06 57.4 75 40.0
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 2.2e-06 56.6 65 49.2
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 2.2e-06 56.6 69 44.9
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 2.9e-06 56.2 57 54.4
Cfa009970 Carpinus fangiana HOM05D021165 ORTHO05D006261 2.9e-06 56.2 85 43.5
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.9e-06 56.2 82 39.0
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 3.8e-06 55.8 65 47.7
SGA_v2.0_scaffold58G20343 Striga asiatica HOM05D007970 ORTHO05D009943 3.8e-06 55.8 95 40.0
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 3.8e-06 55.8 67 58.2
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 6.4e-06 55.1 83 39.8
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 6.4e-06 55.1 83 39.8
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 8.4e-06 54.7 74 45.9
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 8.4e-06 54.7 81 44.4
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 8.4e-06 54.7 81 44.4
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 8.4e-06 54.7 81 40.7


User provided reference genes

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