Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.5e-72 276.2 148 100.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.8e-71 271.9 148 97.3
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 8.2e-71 270.4 148 97.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 8.2e-71 270.4 148 97.3
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.0e-69 265.8 142 98.6
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.4e-62 243.0 147 85.7
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 1.2e-61 240.0 147 83.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.6e-61 239.6 144 86.1
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.0e-61 239.2 142 85.9
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 4.5e-61 238.0 142 85.2
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 5.9e-61 237.7 143 83.2
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.0e-60 236.9 138 87.0
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.7e-60 236.1 145 82.1
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.7e-60 236.1 141 85.8
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 3.8e-60 235.0 142 83.1
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 5.0e-60 234.6 141 85.8
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 5.0e-60 234.6 148 81.8
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 8.5e-60 233.8 142 83.8
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.5e-59 233.0 145 81.4
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.5e-59 232.3 142 82.4
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 4.2e-59 231.5 145 82.8
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 7.2e-59 230.7 142 84.5
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.2e-58 229.9 144 79.2
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.2e-58 229.9 138 84.8
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-58 229.9 142 83.8
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.6e-58 229.6 147 80.3
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.1e-58 229.2 143 80.4
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.7e-58 228.8 139 84.9
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.7e-58 228.8 140 82.1
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 3.6e-58 228.4 141 80.9
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 4.7e-58 228.0 136 86.8
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 6.1e-58 227.6 141 83.0
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.0e-57 226.9 145 80.0
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.0e-57 226.9 145 80.7
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.0e-57 226.9 140 82.9
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.4e-57 226.5 145 80.0
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.8e-57 226.1 143 81.1
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.8e-57 226.1 142 80.3
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.3e-57 225.7 145 79.3
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.3e-57 225.7 145 79.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 3.0e-57 225.3 147 80.3
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 3.0e-57 225.3 138 84.1
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.0e-57 224.9 138 84.1
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 6.7e-57 224.2 141 79.4
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 6.7e-57 224.2 148 85.1
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.7e-57 224.2 139 82.0
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 8.8e-57 223.8 138 84.1
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.5e-56 223.0 127 92.1
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 80.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 79.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 79.3
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 78.6
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.6e-56 222.2 145 76.6
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 3.3e-56 221.9 142 77.5
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 3.3e-56 221.9 139 82.7
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 3.3e-56 221.9 140 78.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 3.3e-56 221.9 140 79.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 3.3e-56 221.9 140 79.3
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 3.3e-56 221.9 140 79.3
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 3.3e-56 221.9 140 79.3
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.7e-56 221.1 140 78.6
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 5.7e-56 221.1 141 80.1
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 9.7e-56 220.3 139 80.6
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 9.7e-56 220.3 139 80.6
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 9.7e-56 220.3 139 80.6
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 9.7e-56 220.3 140 78.6
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 9.7e-56 220.3 145 79.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 9.7e-56 220.3 175 68.0
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.7e-55 219.5 140 78.6
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.7e-55 219.5 140 78.6
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-55 219.2 139 79.1
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-55 218.8 139 78.4
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 2.8e-55 218.8 138 81.2
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.8e-55 218.8 141 78.7
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.8e-55 218.8 140 78.6
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.7e-55 218.4 139 77.7
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.7e-55 218.4 140 79.3
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 4.8e-55 218.0 141 78.0
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.1e-54 216.9 139 77.7
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-54 216.9 139 76.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-54 216.5 138 79.0
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-54 216.1 139 76.3
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-54 216.1 139 76.3
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.8e-54 216.1 144 77.1
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.1e-54 214.9 143 77.6
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 4.1e-54 214.9 138 78.3
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 7.0e-54 214.2 140 75.7
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.0e-54 214.2 139 76.3
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.2e-53 213.4 144 75.7
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.0e-53 212.6 142 75.4
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 5.9e-53 211.1 150 72.7
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 5.9e-53 211.1 186 64.5
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 7.7e-53 210.7 146 73.3
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.3e-52 209.9 135 77.8
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.3e-52 209.9 183 63.9
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.3e-52 209.9 146 74.7
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 2.9e-52 208.8 193 60.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 2.9e-52 208.8 143 76.2
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 3.8e-52 208.4 146 74.7
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 3.8e-52 208.4 147 72.8
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 5.0e-52 208.0 136 77.2
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 6.5e-52 207.6 209 58.9
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.5e-51 205.7 146 71.2
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.2e-50 203.4 118 88.1
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.1e-50 202.6 116 87.9
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.1e-50 202.6 214 56.5
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 2.7e-50 202.2 121 86.0
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-49 198.7 139 71.9
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 3.0e-49 198.7 115 87.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.0e-49 198.4 139 71.9
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 5.2e-49 198.0 121 82.6
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.5e-48 196.4 151 68.2
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.6e-48 195.7 140 75.0
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.8e-48 193.7 139 70.5
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-47 193.4 125 76.8
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 2.8e-47 192.2 118 83.9
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 4.8e-47 191.4 120 80.8
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.4e-46 189.9 116 82.8
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.4e-46 189.9 231 51.5
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 7.0e-46 187.6 120 79.2
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-45 186.8 115 81.7
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-45 186.8 115 81.7
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-45 186.0 115 81.7
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.5e-45 185.3 115 80.9
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 2.9e-44 182.2 115 80.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 3.8e-44 181.8 115 80.0
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.8e-44 181.8 142 64.1
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 5.0e-44 181.4 115 79.1
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 6.5e-44 181.0 115 79.1
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 8.6e-44 180.6 142 58.5
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.5e-43 179.1 109 82.6
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.5e-43 179.1 109 82.6
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.2e-43 177.6 114 78.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 5.2e-41 171.4 146 60.3
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 8.9e-41 170.6 138 58.7
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 2.2e-39 166.0 156 60.9
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 4.9e-39 164.9 140 55.7
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.1e-35 153.7 91 87.9
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.8e-34 149.1 87 88.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.8e-33 146.4 99 77.8
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.3e-31 140.2 96 83.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.6e-29 133.3 200 43.5
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 7.8e-29 131.0 136 55.9
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.6e-28 127.9 82 72.0
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 2.5e-27 125.9 135 44.4
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.1e-25 120.6 70 85.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.4e-25 120.2 145 40.0
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-25 118.6 71 87.3
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-25 118.6 71 87.3
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-24 115.9 71 84.5
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 9.8e-24 114.0 76 69.7
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.4e-22 109.4 64 87.5
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 6.0e-21 104.8 65 84.6
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.6e-18 95.5 65 70.8
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.6e-18 95.5 65 70.8
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 8.9e-17 90.9 66 75.8
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 5.8e-16 88.2 66 74.2
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 5.8e-16 88.2 52 82.7
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 9.9e-16 87.4 144 31.9
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.7e-15 86.7 65 61.5
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.1e-14 84.0 57 77.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 1.2e-13 80.5 135 30.4
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.5e-11 72.8 53 62.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.6e-10 70.1 49 75.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.6e-10 70.1 49 75.5
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.2e-07 59.7 47 70.2


User provided reference genes

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