Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 5.9e-266 920.2 444 100.0
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 2.0e-253 878.6 444 95.7
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.8e-251 872.1 444 94.6
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.5e-224 781.9 444 83.8
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.3e-224 781.6 444 84.9
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 3.4e-221 771.5 444 83.3
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 1.1e-219 766.5 444 82.0
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.1e-187 660.2 444 68.9
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 1.6e-186 656.4 444 69.4
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.0e-185 653.7 443 68.8
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 6.9e-182 641.0 456 66.9
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 1.3e-180 636.7 444 68.2
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.9e-179 632.9 444 66.7
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 2.5e-179 632.5 443 67.7
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.7e-178 629.0 444 67.6
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 6.1e-178 627.9 432 69.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.4e-174 615.9 444 66.0
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 2.4e-174 615.9 444 65.3
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 8.5e-172 607.4 446 65.5
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 5.5e-171 604.7 444 64.0
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 9.4e-171 604.0 444 63.5
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 9.4e-171 604.0 477 61.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 3.6e-170 602.1 442 64.9
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 3.6e-170 602.1 442 65.4
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.4e-169 600.1 444 66.0
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.4e-169 600.1 444 64.4
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 5.7e-168 594.7 444 63.7
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.4e-166 590.1 444 64.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 4.1e-166 588.6 444 65.1
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 5.3e-166 588.2 443 63.2
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 7.0e-166 587.8 444 62.2
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.6e-165 586.6 443 63.0
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 2.0e-165 586.3 445 63.8
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.6e-165 585.9 444 64.4
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 2.6e-165 585.9 444 63.1
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.5e-165 585.1 444 64.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 4.5e-165 585.1 446 60.8
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.0e-164 583.9 442 63.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.0e-164 583.9 444 62.8
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 1.3e-164 583.6 444 62.6
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.8e-164 582.0 445 62.7
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.5e-164 581.3 444 63.5
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.1e-163 580.5 442 62.4
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 1.9e-163 579.7 445 63.8
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 7.2e-163 577.8 445 62.5
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.6e-162 576.6 442 62.9
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.6e-162 576.6 489 58.1
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 4.7e-162 575.1 444 61.7
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 4.7e-162 575.1 444 61.7
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 6.1e-162 574.7 445 61.3
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 8.0e-162 574.3 418 66.0
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.0e-161 573.9 443 61.6
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 3.0e-161 572.4 446 62.1
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 5.2e-161 571.6 444 63.3
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 8.8e-161 570.9 445 61.6
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.2e-160 570.5 444 59.7
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 5.7e-160 568.2 446 60.5
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.2e-159 566.2 446 59.2
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 3.7e-159 565.5 442 62.0
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.8e-158 563.1 444 61.5
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 5.3e-158 561.6 444 60.8
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.2e-157 560.5 444 61.0
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 4.5e-157 558.5 447 60.6
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.0e-156 557.4 444 61.7
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.3e-156 557.0 444 60.1
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 4.2e-155 552.0 445 59.8
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 7.2e-155 551.2 447 58.6
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.6e-154 550.1 445 60.0
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.1e-154 548.1 442 61.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.8e-153 546.6 444 59.7
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.0e-153 545.8 364 70.3
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.2e-152 543.9 444 59.9
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.6e-152 542.7 420 61.7
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.7e-151 540.0 444 59.2
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.8e-151 538.5 442 59.7
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.4e-150 537.0 459 58.0
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 7.0e-150 534.6 444 59.9
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 7.0e-150 534.6 444 59.9
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.2e-149 533.9 444 59.0
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 2.0e-149 533.1 444 58.8
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 5.9e-149 531.6 447 60.4
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 5.9e-149 531.6 447 60.4
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.3e-148 529.6 441 59.6
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.6e-146 523.5 364 69.5
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 2.8e-146 522.7 400 62.5
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 6.8e-145 518.1 440 59.8
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.2e-143 513.1 419 60.9
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 4.9e-143 511.9 387 63.0
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 8.3e-143 511.1 444 58.3
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 5.4e-142 508.4 383 64.8
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.2e-141 507.3 444 56.8
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.1e-138 495.0 382 63.6
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.0e-137 494.2 442 56.3
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 4.9e-135 485.3 381 60.6
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.0e-132 477.6 367 64.0
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.3e-132 476.5 444 52.0
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 5.0e-132 475.3 447 53.9
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.1e-131 474.2 445 53.9
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.5e-131 473.0 444 51.4
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 5.6e-131 471.9 390 59.0
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 7.3e-131 471.5 444 54.3
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.6e-130 469.2 353 64.9
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 2.1e-125 453.4 445 53.3
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 2.1e-125 453.4 445 53.3
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 2.1e-125 453.4 445 53.3
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.3e-123 445.7 463 50.3
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 6.8e-121 438.3 458 49.8
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.6e-120 436.4 417 52.5
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.2e-119 433.3 444 51.8
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.4e-118 429.9 445 50.1
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.6e-114 417.2 448 49.6
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.5e-112 410.6 418 52.4
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 7.3e-107 391.7 308 62.0
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.6e-106 390.6 308 62.3
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 1.7e-95 354.0 446 46.0
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.2e-95 353.6 444 43.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.9e-92 342.8 439 42.1
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 1.1e-91 341.3 442 41.4
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.3e-90 337.8 426 43.0
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.6e-90 337.4 230 70.0
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.1e-89 334.7 245 64.5
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 4.5e-88 329.3 358 51.7
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 6.5e-87 325.5 445 42.2
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.9e-86 323.9 436 40.8
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 2.5e-83 313.5 446 43.0
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.1e-82 310.5 382 45.0
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.1e-75 288.1 312 50.0
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.6e-69 267.7 231 59.7
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.6e-69 266.2 184 67.4
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 6.5e-63 245.7 513 33.3
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.4e-60 238.0 486 33.3
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.2e-50 204.1 142 69.0
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.0e-48 197.6 148 60.1
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.7e-34 151.4 102 64.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.7e-34 151.4 497 29.0
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 9.1e-33 145.6 137 53.3
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 5.2e-28 129.8 93 66.7
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.9e-22 111.3 73 69.9
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 1.6e-21 108.2 72 65.3
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.6e-13 81.6 381 28.1
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 2.1e-13 81.3 69 55.1
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 8.9e-12 75.9 97 42.3
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 7.3e-06 56.2 159 30.2


User provided reference genes

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