Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.8e-70 269.2 145 100.0
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 6.4e-68 260.8 145 98.6
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 5.4e-67 257.7 145 93.8
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.2e-66 256.5 145 93.1
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 3.5e-66 255.0 145 94.5
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.6e-66 254.6 145 93.1
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 6.0e-66 254.2 146 95.2
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 8.9e-62 240.4 148 86.5
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 6.4e-60 234.2 146 87.0
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.1e-59 233.4 144 85.4
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.1e-59 233.4 141 85.1
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.4e-59 233.0 144 84.7
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.4e-59 233.0 149 83.9
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 3.2e-59 231.9 145 85.5
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 3.2e-59 231.9 144 83.3
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 3.2e-59 231.9 144 83.3
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 4.1e-59 231.5 144 84.7
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 4.1e-59 231.5 144 84.0
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 5.4e-59 231.1 149 83.2
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 7.1e-59 230.7 149 81.2
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 7.1e-59 230.7 149 81.2
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 7.1e-59 230.7 145 85.5
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 7.1e-59 230.7 142 84.5
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 9.2e-59 230.3 141 83.0
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.2e-58 229.9 143 84.6
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.2e-58 229.9 143 84.6
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.2e-58 229.9 141 85.1
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.1e-58 229.2 143 83.9
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.7e-58 228.8 139 86.3
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.7e-58 228.8 149 80.5
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 2.7e-58 228.8 140 84.3
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 4.6e-58 228.0 142 83.8
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 4.6e-58 228.0 139 84.9
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 6.0e-58 227.6 149 81.2
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 7.8e-58 227.3 145 79.3
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 7.8e-58 227.3 145 79.3
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 7.8e-58 227.3 148 81.1
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 7.8e-58 227.3 145 82.1
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.8e-58 227.3 144 81.2
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 1.0e-57 226.9 144 81.9
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.3e-57 226.5 141 83.7
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.3e-57 226.5 142 83.1
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 1.3e-57 226.5 148 79.7
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.7e-57 226.1 149 81.2
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.7e-57 226.1 144 81.9
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 2.3e-57 225.7 148 79.7
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 2.3e-57 225.7 125 98.4
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 3.0e-57 225.3 148 79.1
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.0e-57 225.3 138 83.3
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 3.0e-57 225.3 140 82.9
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 3.0e-57 225.3 140 82.9
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 3.9e-57 224.9 147 80.3
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 5.1e-57 224.6 149 80.5
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 5.1e-57 224.6 140 83.6
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 6.6e-57 224.2 139 84.2
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 8.6e-57 223.8 145 80.7
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 8.6e-57 223.8 141 81.6
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 8.6e-57 223.8 145 81.4
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 8.6e-57 223.8 148 83.1
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.1e-56 223.4 149 79.2
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 1.1e-56 223.4 144 80.6
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.1e-56 223.4 144 80.6
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.1e-56 223.4 144 79.9
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.1e-56 223.4 148 78.4
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.5e-56 223.0 139 83.5
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.9e-56 222.6 140 83.6
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 2.5e-56 222.2 138 83.3
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 3.3e-56 221.9 144 80.6
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.3e-56 221.9 144 78.5
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 3.3e-56 221.9 139 81.3
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 4.3e-56 221.5 150 80.7
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 7.3e-56 220.7 147 79.6
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 7.3e-56 220.7 147 79.6
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 7.3e-56 220.7 147 79.6
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 7.3e-56 220.7 138 84.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 9.5e-56 220.3 140 80.7
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.2e-55 219.9 144 79.9
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.6e-55 219.5 142 78.9
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 2.1e-55 219.2 147 78.9
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 2.1e-55 219.2 139 82.7
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.1e-55 219.2 139 81.3
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.1e-55 219.2 147 78.2
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 2.8e-55 218.8 143 79.7
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 2.8e-55 218.8 139 82.0
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 4.7e-55 218.0 138 79.7
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 8.1e-55 217.2 145 80.0
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 8.1e-55 217.2 135 83.7
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.4e-54 215.7 142 78.9
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.4e-54 215.7 142 78.9
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.1e-54 215.3 135 81.5
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 3.1e-54 215.3 142 78.9
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 5.2e-54 214.5 139 79.1
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 6.8e-54 214.2 137 80.3
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 9.9e-53 210.3 136 81.6
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 9.9e-53 210.3 145 75.2
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.2e-52 209.1 144 74.3
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.2e-52 209.1 145 73.1
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 2.9e-52 208.8 136 80.9
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 3.8e-52 208.4 139 78.4
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 6.4e-52 207.6 142 78.9
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 6.4e-52 207.6 136 77.2
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 8.4e-52 207.2 136 77.2
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.1e-51 206.8 138 77.5
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 7.1e-51 204.1 144 73.6
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 9.2e-51 203.8 146 74.7
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.1e-50 202.6 140 75.0
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 1.7e-49 199.5 139 75.5
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 3.9e-49 198.4 139 76.3
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 5.6e-48 194.5 144 69.4
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.6e-47 193.0 139 71.9
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.1e-47 192.6 145 70.3
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.8e-47 192.2 146 69.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 6.2e-47 191.0 143 67.8
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 6.2e-47 191.0 138 71.7
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 6.2e-47 191.0 138 71.7
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 6.2e-47 191.0 138 71.7
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.1e-46 190.3 143 67.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 141 69.5
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.4e-46 189.1 136 70.6
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 3.1e-46 188.7 140 67.9
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 3.1e-46 188.7 143 67.1
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.1e-46 188.7 137 70.8
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 6.9e-46 187.6 139 71.2
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.4e-45 184.9 118 81.4
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 4.9e-44 181.4 139 71.2
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 8.4e-44 180.6 139 71.2
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.9e-43 179.5 138 69.6
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.9e-43 179.5 138 69.6
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 7.8e-42 174.1 120 78.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.7e-41 172.9 138 66.7
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.3e-41 172.6 135 65.9
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 4.3e-40 168.3 139 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 5.6e-40 167.9 139 61.2
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 1.1e-38 163.7 138 61.6
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 5.4e-35 151.4 142 56.3
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.1e-34 149.4 132 60.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 6.7e-33 144.4 130 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.1e-31 139.4 120 56.7
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.9e-28 129.0 135 54.8
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.6e-26 123.2 109 63.3
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 4.0e-22 108.6 95 62.1
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 5.3e-22 108.2 130 41.5
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 9.0e-22 107.5 80 70.0
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 3.2e-19 99.0 138 39.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 6.9e-14 81.3 87 49.4
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.0e-12 77.4 48 79.2


User provided reference genes

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