Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 4.9e-79 297.7 150 100.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 2.3e-76 288.9 150 96.7
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.4e-65 253.1 150 84.7
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 7.8e-61 237.3 170 73.5
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 76.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 6.2e-58 227.6 149 76.5
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-57 226.9 150 72.7
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.1e-57 226.9 150 72.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.5e-56 223.0 150 72.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.6e-56 222.2 145 74.5
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 72.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 74.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 5.8e-56 221.1 150 74.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 73.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 71.3
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 70.7
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 70.7
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 70.7
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.4e-54 216.5 150 68.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 71.3
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 71.3
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 70.0
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 5.4e-54 214.5 148 75.7
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 69.3
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 70.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 7.1e-54 214.2 144 72.9
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 9.2e-54 213.8 145 73.1
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 68.7
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 70.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 70.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.6e-53 213.0 149 71.1
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 70.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 72.0
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 71.3
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 69.3
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 70.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.5e-53 211.8 148 70.3
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 69.6
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 68.0
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 69.3
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 2.3e-52 209.1 161 64.6
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 66.7
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 5.1e-52 208.0 148 66.9
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.6e-52 207.6 150 66.7
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 67.3
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 67.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.5e-51 206.5 150 66.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 64.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 66.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 66.0
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.9e-51 206.1 146 69.2
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-51 205.7 150 66.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.3e-51 205.3 148 67.6
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 4.3e-51 204.9 150 66.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.6e-51 204.5 150 65.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.6e-51 204.5 150 65.3
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.3e-51 204.1 149 63.8
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 9.6e-51 203.8 150 65.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.2e-50 203.4 151 66.2
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.2e-50 203.4 150 63.3
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.2e-50 203.4 148 66.9
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.2e-50 203.4 146 67.1
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.6e-50 203.0 150 68.0
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 2.1e-50 202.6 149 64.4
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.8e-50 202.2 150 68.0
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 2.8e-50 202.2 145 65.5
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.8e-50 202.2 150 63.3
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 3.6e-50 201.8 150 67.3
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.7e-50 201.4 144 66.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 4.7e-50 201.4 150 62.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 6.2e-50 201.1 150 62.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 6.2e-50 201.1 150 66.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 8.1e-50 200.7 144 65.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 8.1e-50 200.7 149 63.8
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.1e-49 200.3 150 66.7
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.1e-49 200.3 143 65.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 2.4e-49 199.1 145 65.5
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 5.2e-49 198.0 149 66.4
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 6.9e-49 197.6 149 63.1
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 6.9e-49 197.6 144 68.8
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.2e-48 196.8 162 61.1
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.2e-48 196.8 150 66.0
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 61.7
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 64.4
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 4.4e-48 194.9 217 51.2
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 5.8e-48 194.5 149 65.8
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 7.6e-48 194.1 157 59.9
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 7.6e-48 194.1 144 68.1
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.3e-47 193.4 150 62.7
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 2.2e-47 192.6 142 66.2
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 4.9e-47 191.4 138 66.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 63.1
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 6.4e-47 191.0 143 64.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.4e-47 191.0 143 64.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.4e-47 191.0 143 64.3
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 6.4e-47 191.0 146 65.1
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 8.4e-47 190.7 149 61.7
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 8.4e-47 190.7 149 62.4
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 145 63.4
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 145 63.4
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.4e-46 189.9 160 57.5
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-46 189.9 143 63.6
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.9e-46 189.5 143 63.6
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.9e-46 189.5 149 61.7
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.9e-46 189.5 149 63.1
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.2e-46 188.7 149 62.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 5.4e-46 188.0 140 62.1
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 61.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.1e-45 186.0 161 57.1
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 2.7e-45 185.7 178 55.6
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 3.5e-45 185.3 144 61.8
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.5e-45 185.3 145 62.8
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 4.6e-45 184.9 146 61.0
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 4.6e-45 184.9 149 61.7
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 4.6e-45 184.9 149 59.7
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 7.8e-45 184.1 135 66.7
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 7.8e-45 184.1 149 60.4
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 7.8e-45 184.1 193 55.4
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 7.8e-45 184.1 140 61.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 3.0e-44 182.2 149 60.4
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.9e-44 181.8 145 58.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.3e-42 176.8 144 57.6
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.3e-42 176.8 89 96.6
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.8e-42 175.6 150 55.3
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.8e-42 175.6 150 55.3
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.2e-42 174.5 139 57.6
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.1e-41 173.7 144 56.2
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.1e-41 173.7 133 66.9
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.0e-41 171.8 144 55.6
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 9.0e-41 170.6 148 58.8
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.2e-40 170.2 142 60.6
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.5e-40 169.9 143 55.2
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.5e-40 169.9 151 54.3
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.5e-40 169.9 143 55.2
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.5e-40 168.3 139 56.1
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 2.9e-39 165.6 138 56.5
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.8e-39 165.2 137 59.1
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.1e-38 163.7 144 52.8
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-35 153.7 108 69.4
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-35 153.7 108 69.4
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 3.7e-34 148.7 151 52.3
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.1e-33 145.6 149 51.7
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 9.0e-33 144.1 118 56.8
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 9.0e-33 144.1 153 51.0
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 9.9e-32 140.6 89 76.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 6.4e-31 137.9 127 55.9
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 6.4e-31 137.9 127 55.9
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.4e-30 136.7 89 75.3
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.9e-30 136.3 143 51.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 7.1e-30 134.4 110 59.1
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.3e-27 125.6 145 44.1
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 7.4e-27 124.4 99 61.6
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 6.9e-25 117.9 105 58.1
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.0e-23 114.0 144 41.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 3.8e-23 112.1 82 62.2
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 8.4e-23 110.9 149 45.0
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.4e-22 110.2 135 43.0
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 5.5e-22 108.2 86 53.5
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 8.7e-20 100.9 136 33.8
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-19 100.1 85 52.9
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.7e-19 97.4 103 46.6
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 8.2e-18 94.4 134 33.6
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.2e-15 86.3 144 36.1
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.2e-15 86.3 145 31.7
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 8.5e-15 84.3 102 44.1
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.5e-14 82.8 72 56.9
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.2e-14 82.4 106 35.8
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.0e-12 75.9 84 52.4
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 5.1e-12 75.1 87 43.7
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.1e-11 73.9 51 64.7
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.4e-09 66.2 136 25.0
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 2.4e-09 66.2 132 26.5
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 9.1e-09 64.3 44 61.4
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 6.5e-07 58.2 46 60.9


User provided reference genes

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