Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 8.6e-61 236.9 126 100.0
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 4.2e-60 234.6 126 99.2
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 4.2e-60 234.6 126 99.2
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 8.9e-58 226.9 126 95.2
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 8.9e-58 226.9 126 95.2
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 6.4e-56 220.7 126 94.4
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 7.0e-55 217.2 126 92.1
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.4e-47 192.2 113 85.8
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.2e-47 191.8 126 80.2
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 7.0e-47 190.7 126 79.4
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.0e-45 185.3 126 77.8
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 3.9e-45 184.9 115 80.9
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 5.0e-45 184.5 104 87.5
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.1e-44 183.3 124 76.6
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 5.6e-44 181.0 124 77.4
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.2e-43 179.9 123 78.9
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.2e-43 179.9 121 78.5
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.6e-43 178.3 120 79.2
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 6.2e-43 177.6 130 71.5
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 3.1e-42 175.3 124 75.0
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 5.2e-42 174.5 116 78.4
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 8.9e-42 173.7 122 77.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 8.9e-42 173.7 122 77.0
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.2e-41 173.3 120 77.5
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.5e-41 172.9 117 76.1
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 4.4e-41 171.4 124 71.8
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.5e-41 170.6 122 74.6
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.3e-40 169.9 106 80.2
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.7e-40 169.5 116 76.7
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.7e-40 168.3 122 73.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 3.7e-40 168.3 116 77.6
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-39 166.8 116 75.9
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 1.4e-39 166.4 120 74.2
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.4e-39 166.4 116 74.1
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.4e-39 165.6 120 75.0
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.4e-39 165.6 120 75.0
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.2e-39 165.2 119 73.9
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 4.1e-39 164.9 122 71.3
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 4.1e-39 164.9 125 71.2
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 5.4e-39 164.5 116 73.3
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 7.1e-39 164.1 120 72.5
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.2e-38 163.3 117 71.8
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.6e-38 162.9 101 80.2
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-38 162.5 116 73.3
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.1e-38 162.5 120 74.2
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.7e-38 162.2 107 76.6
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 3.5e-38 161.8 116 73.3
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 4.6e-38 161.4 116 73.3
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 4.6e-38 161.4 116 73.3
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 4.6e-38 161.4 116 72.4
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 6.0e-38 161.0 121 71.1
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 7.8e-38 160.6 116 72.4
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 7.8e-38 160.6 117 70.9
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.0e-37 160.2 120 73.3
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.0e-37 160.2 117 71.8
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.0e-37 160.2 117 71.8
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.0e-37 160.2 116 71.6
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.0e-37 160.2 114 71.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.3e-37 159.8 118 69.5
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.3e-37 159.8 117 72.6
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.7e-37 159.5 96 81.2
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.7e-37 159.5 116 71.6
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-37 159.1 116 72.4
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.3e-37 159.1 120 72.5
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.3e-37 159.1 117 70.1
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 3.9e-37 158.3 114 71.1
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 5.1e-37 157.9 114 70.2
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 5.1e-37 157.9 118 68.6
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 5.1e-37 157.9 122 71.3
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 6.6e-37 157.5 116 71.6
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.1e-36 156.8 114 73.7
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-36 156.8 110 71.8
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-36 156.8 110 71.8
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.1e-36 156.8 110 74.5
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.5e-36 156.4 111 71.2
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.5e-36 156.4 109 73.4
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.9e-36 156.0 113 69.9
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.9e-36 156.0 113 69.9
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.5e-36 155.6 110 70.0
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 3.3e-36 155.2 110 73.6
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 3.3e-36 155.2 117 68.4
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.6e-36 154.5 116 70.7
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.6e-36 154.5 101 77.2
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 9.5e-36 153.7 122 66.4
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.2e-35 153.3 118 66.9
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.2e-35 153.3 100 77.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-35 153.3 100 77.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-35 153.3 100 77.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-35 153.3 100 77.0
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.6e-35 152.9 117 69.2
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.6e-35 152.9 117 69.2
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.6e-35 152.9 117 69.2
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.8e-35 152.1 109 70.6
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.8e-35 152.1 109 70.6
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.8e-35 152.1 128 65.6
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.6e-35 151.8 113 69.0
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 4.7e-35 151.4 100 76.0
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 6.2e-35 151.0 116 68.1
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 6.2e-35 151.0 122 65.6
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-34 149.8 121 65.3
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.4e-34 149.8 121 65.3
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.3e-34 149.1 100 75.0
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 3.1e-34 148.7 118 66.9
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.1e-34 148.7 120 65.8
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 6.8e-34 147.5 101 73.3
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-33 146.0 122 63.1
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.6e-33 145.6 125 62.4
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 5.8e-33 144.4 98 72.4
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 5.8e-33 144.4 121 63.6
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 5.8e-33 144.4 107 72.0
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 2.2e-32 142.5 125 62.4
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 2.4e-31 139.0 101 71.3
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.2e-31 138.7 109 64.2
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 4.1e-31 138.3 105 68.6
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 5.4e-31 137.9 114 62.3
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.2e-30 136.7 127 57.5
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 3.5e-30 135.2 121 63.6
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 3.5e-30 135.2 118 61.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.9e-28 129.4 101 68.3
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.1e-27 125.9 85 74.1
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.4e-26 123.2 70 84.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 2.4e-26 122.5 100 64.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 4.0e-26 121.7 105 60.0
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.2e-25 120.2 69 82.6
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 9.3e-23 110.5 89 65.2
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-22 110.2 84 67.9
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 7.8e-22 107.5 108 53.7
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 3.0e-21 105.5 90 61.1
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 3.0e-21 105.5 90 61.1
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 3.9e-21 105.1 103 53.4
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.1e-20 103.6 98 55.1
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.5e-20 102.4 67 74.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 9.6e-20 100.5 68 73.5
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 6.2e-19 97.8 64 71.9
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 8.1e-19 97.4 53 88.7
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 8.1e-19 97.4 56 83.9
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-18 96.3 69 72.5
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 3.2e-15 85.5 74 63.5
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 7.9e-14 80.9 72 62.5
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-13 80.1 85 56.5
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 6.6e-13 77.8 103 43.7
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.1e-12 77.0 117 44.4
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 7.4e-12 74.3 57 63.2
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-11 73.2 67 59.7
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.1e-11 72.8 74 50.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 8.1e-11 70.9 114 42.1
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.8e-10 69.7 114 40.4
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 9.0e-10 67.4 52 71.2
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.6e-09 65.9 59 55.9
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 4.5e-09 65.1 58 60.3
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 5.8e-09 64.7 81 50.6
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 3.8e-08 62.0 48 66.7
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 2.4e-07 59.3 67 53.7
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 9.3e-07 57.4 31 83.9
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-06 56.6 74 47.3
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 6.0e-06 54.7 43 62.8


User provided reference genes

Program Settings