Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 1.9e-201 705.7 366 100.0
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 4.4e-142 508.4 268 95.9
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.3e-141 506.9 268 95.5
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.9e-140 503.1 268 94.8
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 4.2e-124 448.7 272 86.0
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 2.9e-117 426.0 262 81.7
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 2.8e-112 409.5 240 85.4
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 2.3e-98 363.2 264 70.8
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 8.7e-98 361.3 261 72.4
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 4.1e-95 352.4 274 68.2
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 6.7e-90 335.1 270 65.9
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 8.8e-90 334.7 234 72.6
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 7.4e-89 331.6 275 65.5
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.1e-87 327.8 268 68.3
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 1.4e-87 327.4 266 65.0
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 1.4e-87 327.4 269 65.4
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.2e-86 324.3 277 61.7
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 1.0e-85 321.2 264 62.9
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 1.9e-84 317.0 266 63.5
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 7.2e-84 315.1 259 65.3
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 7.9e-83 311.6 271 62.7
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 8.8e-82 308.1 238 67.6
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 7.4e-81 305.1 266 63.5
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 1.7e-80 303.9 259 62.9
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 2.8e-80 303.1 236 68.6
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 6.3e-80 302.0 273 60.4
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 5.3e-79 298.9 258 64.3
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 7.0e-79 298.5 270 61.5
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 9.1e-79 298.1 272 62.5
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 4.5e-78 295.8 232 67.7
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.7e-77 293.9 270 61.1
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 8.5e-77 291.6 276 60.1
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.1e-76 291.2 235 66.4
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 5.5e-76 288.9 273 59.7
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 1.6e-75 287.3 274 61.3
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 2.1e-75 287.0 242 61.6
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 4.7e-75 285.8 229 65.9
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 1.0e-74 284.6 269 59.1
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.3e-74 283.5 268 59.3
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 4.0e-74 282.7 268 59.0
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 6.7e-74 282.0 270 56.7
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 2.6e-73 280.0 260 59.2
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 2.6e-73 280.0 238 64.3
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 9.7e-73 278.1 222 66.2
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 9.7e-73 278.1 268 58.6
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.2e-72 276.9 268 58.6
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 2.8e-72 276.6 285 57.9
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 3.1e-71 273.1 261 60.9
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 4.1e-71 272.7 229 63.8
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 7.0e-71 271.9 266 58.6
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 1.2e-70 271.2 253 57.7
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 4.5e-70 269.2 211 66.8
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.3e-69 267.7 219 65.3
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 1.3e-69 267.7 269 56.9
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.7e-69 267.3 269 58.0
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 8.5e-69 265.0 257 58.8
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 8.5e-69 265.0 257 59.1
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 5.5e-68 262.3 243 59.3
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 9.4e-68 261.5 219 63.9
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 2.7e-67 260.0 253 57.7
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 6.1e-67 258.8 266 56.4
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 6.1e-67 258.8 255 58.0
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 1.4e-66 257.7 219 62.1
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.2e-65 254.6 242 59.9
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 1.5e-65 254.2 270 55.6
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.6e-65 253.4 257 57.2
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 2.6e-65 253.4 273 54.6
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 5.7e-65 252.3 231 61.0
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 2.2e-64 250.4 258 57.0
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 6.3e-64 248.8 264 55.3
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 6.3e-64 248.8 264 55.3
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 3.1e-63 246.5 214 61.7
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 4.1e-63 246.1 257 56.4
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 4.1e-63 246.1 256 54.7
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 5.0e-61 239.2 219 59.4
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 1.1e-60 238.0 231 58.9
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 1.1e-60 238.0 256 54.7
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 3.2e-60 236.5 256 55.5
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 7.2e-60 235.3 256 54.7
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 1.2e-59 234.6 269 52.0
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 1.6e-59 234.2 246 57.3
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 1.6e-59 234.2 219 58.9
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 3.6e-59 233.0 219 62.6
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 3.0e-58 229.9 173 68.8
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.0e-57 227.3 202 63.9
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.7e-56 224.2 239 54.8
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 7.3e-52 208.8 258 50.0
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.8e-50 204.1 228 53.1
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.8e-50 204.1 228 53.1
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.8e-50 204.1 182 60.4
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 2.3e-50 203.8 238 50.0
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 2.3e-50 203.8 359 40.9
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 4.0e-50 203.0 206 55.8
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 4.0e-50 203.0 206 55.8
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.0e-49 200.7 203 61.1
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 2.6e-49 200.3 298 44.0
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.7e-48 197.6 250 49.6
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 2.4e-47 193.7 226 50.9
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 7.0e-47 192.2 236 51.3
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 9.2e-47 191.8 197 56.9
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 9.2e-47 191.8 197 56.3
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 9.2e-47 191.8 221 51.1
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 3.5e-46 189.9 219 53.4
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 4.6e-46 189.5 197 55.8
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 5.9e-46 189.1 254 48.4
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 1.0e-45 188.3 236 49.6
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 2.3e-45 187.2 261 47.5
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 4.3e-44 183.0 118 77.1
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 6.2e-43 179.1 172 58.7
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 2.0e-41 174.1 239 45.2
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 1.1e-39 168.3 225 48.9
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.9e-39 167.5 160 59.4
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 2.0e-38 164.1 98 83.7
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 8.3e-32 142.1 157 50.3
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 1.1e-31 141.7 97 74.2
PGSC0003DMG400013032 Solanum tuberosum HOM05D007592 ORTHO05D004645 1.4e-31 141.4 84 89.3
PGSC0003DMG400046067 Solanum tuberosum HOM05D007592 ORTHO05D004645 3.2e-31 140.2 84 89.3
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 8.1e-27 125.6 183 43.7
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 4.0e-26 123.2 177 44.1
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 4.4e-25 119.8 116 54.3
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 4.4e-25 119.8 70 85.7
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 1.3e-24 118.2 122 55.7
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.7e-24 117.9 73 79.5
PGSC0003DMG400037078 Solanum tuberosum HOM05D008583 ORTHO05D004645 8.4e-24 115.5 92 70.7
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 7.1e-23 112.5 154 47.4
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 1.0e-21 108.6 211 39.3
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.3e-21 108.2 75 72.0
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 6.6e-21 105.9 203 37.9
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 8.6e-21 105.5 68 77.9
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 5.2e-18 96.3 226 34.5
PGSC0003DMG400002254 Solanum tuberosum HOM05D007592 ORTHO05D004645 1.2e-17 95.1 52 92.3
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 3.4e-17 93.6 63 76.2
Manes.01G069750 Manihot esculenta HOM05D007592 ORTHO05D004645 4.4e-17 93.2 84 59.5
Manes.07G048750 Manihot esculenta HOM05D007592 ORTHO05D004645 1.7e-16 91.3 84 58.3
PGSC0003DMG400006215 Solanum tuberosum HOM05D007592 ORTHO05D004645 1.7e-16 91.3 52 90.4
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 2.4e-15 87.4 48 93.8
PGSC0003DMG400029060 Solanum tuberosum HOM05D007592 ORTHO05D004645 1.0e-13 82.0 44 93.2
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 2.5e-12 77.4 84 52.4
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 1.3e-11 75.1 173 36.4
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 1.5e-09 68.2 84 48.8
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 2.0e-09 67.8 70 52.9
Manes.13G094101 Manihot esculenta HOM05D007592 ORTHO05D004645 7.6e-09 65.9 84 48.8
Manes.16G106550 Manihot esculenta HOM05D007592 ORTHO05D004645 3.2e-07 60.5 47 61.7
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 9.3e-07 58.9 124 33.9
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.2e-06 58.5 84 48.8
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 2.1e-06 57.8 93 43.0
Manes.03G086206 Manihot esculenta HOM05D007592 ORTHO05D004645 2.7e-06 57.4 47 59.6
Manes.12G071232 Manihot esculenta HOM05D007592 ORTHO05D004645 2.7e-06 57.4 47 59.6


User provided reference genes

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