Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 1.6e-244 849.0 429 100.0
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 5.1e-222 774.2 406 95.3
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 4.3e-181 638.3 405 78.8
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.8e-179 632.9 362 87.6
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 3.5e-162 575.5 302 94.7
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 4.4e-141 505.4 409 64.5
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 1.2e-130 470.7 408 60.8
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 2.0e-130 469.9 397 61.2
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 3.5e-130 469.2 318 75.5
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 2.1e-127 459.9 404 61.1
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.1e-126 457.6 402 60.2
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 8.9e-126 454.5 404 59.4
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.2e-125 454.1 406 59.9
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.2e-125 454.1 403 58.6
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 2.0e-125 453.4 373 62.7
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.0e-125 453.4 404 59.2
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 5.8e-125 451.8 406 58.4
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 7.5e-125 451.4 436 56.9
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.9e-124 449.5 406 58.6
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 6.4e-124 448.4 355 64.5
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 8.3e-124 448.0 406 58.9
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 7.0e-123 444.9 410 57.8
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 6.0e-122 441.8 397 57.4
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 6.6e-121 438.3 404 57.2
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 6.6e-121 438.3 400 54.2
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.9e-120 436.8 404 57.7
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.5e-120 436.4 406 58.6
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 4.3e-120 435.6 411 57.7
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 5.6e-120 435.3 403 59.6
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 9.5e-120 434.5 417 55.6
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 3.6e-119 432.6 407 54.8
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 4.7e-119 432.2 404 55.4
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 8.1e-119 431.4 402 57.0
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.1e-118 431.0 405 54.3
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.8e-118 430.3 404 54.2
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.8e-118 430.3 402 57.7
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 2.3e-118 429.9 408 52.9
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 2.3e-118 429.9 448 53.1
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 3.1e-118 429.5 408 53.7
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 3.1e-118 429.5 402 57.7
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.2e-117 427.6 440 54.1
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 2.0e-117 426.8 402 57.5
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 3.4e-117 426.0 402 58.0
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 1.3e-116 424.1 414 54.3
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 6.4e-116 421.8 403 56.1
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 8.3e-116 421.4 405 57.3
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 8.3e-116 421.4 410 55.9
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.9e-115 420.2 402 57.0
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 5.4e-115 418.7 406 53.9
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 7.1e-115 418.3 406 56.9
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.3e-113 413.3 407 55.5
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 3.0e-113 412.9 396 54.5
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 6.6e-113 411.8 454 50.9
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.2e-111 407.5 433 52.0
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 6.2e-111 405.2 409 55.3
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 2.4e-110 403.3 416 52.9
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 4.0e-110 402.5 435 52.6
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 5.2e-110 402.1 417 55.6
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 6.8e-110 401.7 403 54.3
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.1e-104 384.4 403 55.1
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.9e-104 383.6 485 47.4
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 5.6e-104 382.1 393 55.7
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 5.8e-101 372.1 404 50.7
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.8e-100 369.4 423 49.6
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.1e-99 367.9 413 49.6
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 1.1e-99 367.9 319 60.5
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 4.2e-99 365.9 532 44.4
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 5.1e-97 359.0 405 51.9
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.5e-96 356.7 295 61.4
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 5.6e-96 355.5 304 59.9
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 6.2e-95 352.1 402 48.5
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.4e-94 350.9 438 48.2
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.7e-92 344.0 297 57.2
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 2.2e-92 343.6 285 62.8
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.2e-91 339.3 284 58.5
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.1e-90 337.0 406 49.0
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 2.1e-90 337.0 426 45.8
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 2.1e-87 327.0 442 44.8
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 2.4e-86 323.6 467 45.0
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 3.1e-86 323.2 318 54.4
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.3e-83 311.6 313 55.9
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.6e-82 310.8 315 52.7
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.5e-82 309.7 422 43.4
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 4.6e-82 309.3 311 55.0
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.3e-81 307.8 330 51.8
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 6.7e-81 305.4 329 51.1
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.9e-80 303.9 307 52.8
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 1.9e-80 303.9 305 54.1
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.4e-78 297.0 337 51.9
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 7.6e-77 292.0 409 42.8
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 3.8e-76 289.7 310 48.4
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 7.9e-74 282.0 276 56.2
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 8.7e-73 278.5 284 52.8
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 4.3e-72 276.2 309 50.8
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 9.7e-72 275.0 463 37.6
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.4e-70 271.2 438 42.2
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 3.8e-68 263.1 571 35.7
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.2e-67 260.0 410 43.4
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 3.0e-65 253.4 294 46.9
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 2.2e-63 247.3 351 41.3
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.4e-57 228.0 294 46.3
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.9e-57 226.5 157 72.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 2.0e-53 214.2 329 40.4
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 9.4e-51 205.3 283 44.9
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 2.7e-50 203.8 184 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 3.6e-50 203.4 319 40.1
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 4.7e-50 203.0 264 41.3
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.0e-49 201.8 260 43.8
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.6e-40 170.6 236 44.5
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 5.9e-37 159.5 299 36.5
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 2.2e-36 157.5 99 79.8
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 1.9e-35 154.5 100 76.0
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 3.1e-30 137.1 296 34.1
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 5.0e-28 129.8 85 71.8
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.5e-27 126.3 83 75.9
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.4e-25 121.7 83 71.1
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 4.9e-23 113.2 93 62.4
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.0e-20 105.5 114 45.6
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 6.6e-20 102.8 69 73.9
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 3.6e-18 97.1 86 58.1
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 1.2e-16 92.0 67 67.2
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 2.0e-16 91.3 219 32.4
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.6e-13 80.1 54 70.4
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.9e-12 77.0 61 60.7
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 7.5e-08 62.8 87 42.5
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 8.3e-07 59.3 62 53.2
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.2e-06 55.8 69 44.9


User provided reference genes

Program Settings