Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 3.4e-68 261.5 132 100.0
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 1.0e-64 250.0 132 97.0
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 1.0e-64 250.0 132 97.0
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 9.3e-58 226.9 133 88.0
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 9.3e-58 226.9 133 88.0
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 1.1e-55 219.9 127 86.6
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 9.9e-52 206.8 133 83.5
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 1.7e-51 206.1 133 77.4
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.4e-50 202.2 133 80.5
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 4.2e-50 201.4 133 77.4
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 2.5e-47 192.2 134 72.4
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 2.5e-47 192.2 134 73.1
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 3.3e-47 191.8 134 72.4
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 4.3e-47 191.4 133 72.2
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 9.6e-47 190.3 133 72.9
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 1.6e-46 189.5 134 73.9
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 2.1e-46 189.1 134 72.4
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 3.7e-46 188.3 132 72.0
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 6.2e-46 187.6 132 73.5
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.1e-45 185.3 133 68.4
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 3.1e-45 185.3 133 73.7
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 4.0e-45 184.9 132 72.7
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 4.0e-45 184.9 132 71.2
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 4.0e-45 184.9 132 69.7
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 5.3e-45 184.5 136 70.6
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 9.0e-45 183.7 132 71.2
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 9.0e-45 183.7 133 69.2
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 9.0e-45 183.7 133 70.7
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 1.5e-44 183.0 133 70.7
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 2.0e-44 182.6 133 69.2
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 2.6e-44 182.2 135 69.6
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 2.6e-44 182.2 134 67.9
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 4.5e-44 181.4 133 70.7
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 4.5e-44 181.4 132 66.7
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 4.5e-44 181.4 132 71.2
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 4.5e-44 181.4 132 71.2
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 5.8e-44 181.0 134 67.9
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 5.8e-44 181.0 132 68.2
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 7.6e-44 180.6 133 69.2
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 1.7e-43 179.5 133 71.4
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 2.2e-43 179.1 133 69.9
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 2.2e-43 179.1 134 70.9
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 3.8e-43 178.3 132 65.9
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 3.8e-43 178.3 133 69.2
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 3.8e-43 178.3 133 69.2
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 3.8e-43 178.3 133 68.4
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 4.9e-43 177.9 133 69.2
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.9e-43 177.9 132 69.7
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 4.9e-43 177.9 137 67.2
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 4.9e-43 177.9 133 69.9
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 4.9e-43 177.9 128 71.1
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 6.5e-43 177.6 134 69.4
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 6.5e-43 177.6 134 67.9
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 8.4e-43 177.2 134 67.9
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.1e-42 176.8 132 68.9
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 1.1e-42 176.8 132 68.9
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 1.4e-42 176.4 132 68.9
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 1.4e-42 176.4 134 66.4
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 1.4e-42 176.4 133 66.9
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 1.9e-42 176.0 133 67.7
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 3.2e-42 175.3 111 79.3
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 4.2e-42 174.9 133 69.9
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.2e-42 174.9 132 68.9
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 5.5e-42 174.5 134 70.9
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 5.5e-42 174.5 133 67.7
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 5.5e-42 174.5 133 67.7
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 5.5e-42 174.5 133 69.9
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 5.5e-42 174.5 133 69.9
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 7.1e-42 174.1 110 77.3
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 9.3e-42 173.7 133 69.2
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 1.2e-41 173.3 133 66.9
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.6e-41 172.9 134 69.4
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 2.7e-41 172.2 132 65.2
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 3.5e-41 171.8 133 69.2
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 3.5e-41 171.8 133 68.4
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 4.6e-41 171.4 133 67.7
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.6e-41 171.4 107 77.6
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 6.0e-41 171.0 133 67.7
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 1.3e-40 169.9 119 70.6
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.8e-40 169.5 118 73.7
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.8e-40 169.5 137 67.2
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.9e-40 168.3 137 66.4
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.9e-40 168.3 137 66.4
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 5.1e-40 167.9 137 66.4
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.1e-40 167.9 137 66.4
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.1e-40 167.9 137 66.4
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.1e-40 167.9 137 66.4
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 6.7e-40 167.5 110 75.5
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 6.7e-40 167.5 133 66.9
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.7e-40 167.2 135 67.4
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.9e-39 166.0 135 64.4
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.9e-39 166.0 135 67.4
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 3.3e-39 165.2 118 71.2
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 4.3e-39 164.9 110 75.5
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 4.3e-39 164.9 110 75.5
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 4.3e-39 164.9 110 75.5
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 4.3e-39 164.9 110 75.5
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 9.7e-39 163.7 133 65.4
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 9.7e-39 163.7 110 74.5
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 9.7e-39 163.7 137 65.7
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.7e-39 163.7 137 65.7
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 2.2e-38 162.5 117 70.1
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 2.2e-38 162.5 110 72.7
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 3.7e-38 161.8 100 80.0
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.8e-37 159.5 92 79.3
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.8e-37 159.5 133 66.2
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.8e-37 159.5 92 81.5
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 4.1e-37 158.3 134 62.7
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 5.3e-37 157.9 103 74.8
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 2.0e-36 156.0 101 75.2
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.0e-36 156.0 110 71.8
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 2.0e-36 156.0 92 79.3
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.6e-36 155.6 132 65.2
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 7.6e-36 154.1 92 78.3
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 7.6e-36 154.1 133 63.9
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 6.5e-35 151.0 120 64.2
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 6.5e-35 151.0 133 61.7
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.5e-34 149.1 112 67.9
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 7.2e-34 147.5 130 60.8
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 2.1e-33 146.0 135 57.8
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 2.3e-32 142.5 109 65.1
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 4.8e-30 134.8 133 53.4
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-29 133.7 125 59.2
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 1.8e-29 132.9 134 53.0
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.1e-26 123.6 119 55.5
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 7.2e-26 120.9 109 58.7
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.3e-23 112.1 90 64.4
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.7e-20 100.9 57 78.9
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 1.0e-19 100.5 92 53.3
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 6.5e-19 97.8 101 50.5
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 2.5e-18 95.9 109 47.7
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 3.2e-18 95.5 106 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 9.4e-18 94.0 124 43.5
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 4.4e-15 85.1 51 72.5
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.8e-13 79.7 62 67.7
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 2.5e-10 69.3 99 38.4
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 3.2e-10 68.9 129 40.3
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 5.5e-10 68.2 69 56.5
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 1.5e-07 60.1 53 66.0
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 4.4e-07 58.5 81 49.4


User provided reference genes

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