Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016067 Solanum tuberosum HOM05D002305 ORTHO05D394596 1.8e-33 145.2 67 100.0
PGSC0003DMG400014257 Solanum tuberosum HOM05D002305 ORTHO05D397920 1.6e-29 132.1 67 91.0
PGSC0003DMG401005707 Solanum tuberosum HOM05D002305 ORTHO05D396521 1.8e-25 118.6 67 80.6
Nitab4.5_0001917g0010 Nicotiana tabacum HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 75.7
Sopen09g031500 Solanum pennellii HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 75.7
PGSC0003DMG400006449 Solanum tuberosum HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 75.7
Nitab4.5_0000090g0280 Nicotiana tabacum HOM05D002305 ORTHO05D002528 8.2e-10 66.6 37 73.0
Glyma.20G150200 Glycine max HOM05D002305 ORTHO05D002528 1.4e-09 65.9 37 73.0
Solyc09g082650.4 Solanum lycopersicum HOM05D002305 ORTHO05D002528 1.4e-09 65.9 37 73.0
CAN.G1437.6 Capsicum annuum HOM05D002305 ORTHO05D002528 1.8e-09 65.5 37 73.0
Ciclev10005931m.g Citrus clementina HOM05D002305 ORTHO05D002528 1.8e-09 65.5 37 73.0
FvH4_4g01140 Fragaria vesca HOM05D002305 ORTHO05D002528 1.8e-09 65.5 37 73.0
FAN12G2438 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.8e-09 65.5 37 73.0
Peaxi162Scf00316g00526 Petunia axillaris HOM05D002305 ORTHO05D002528 1.8e-09 65.5 37 73.0
RcHm_v2.0_Chr4g0387721 Rosa chinensis HOM05D002305 ORTHO05D002528 1.8e-09 65.5 37 73.0
MD13G1199600 Malus domestica HOM05D002305 ORTHO05D002528 2.4e-09 65.1 37 73.0
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.1e-09 64.7 37 73.0
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.0e-09 64.3 37 73.0
Glyma.10G244100 Glycine max HOM05D002305 ORTHO05D002528 4.0e-09 64.3 37 70.3
Potri.008G157500 Populus trichocarpa HOM05D002305 ORTHO05D002528 4.0e-09 64.3 37 70.3
Atru.chr4.2370 Acer truncatum HOM05D002305 ORTHO05D002528 5.3e-09 63.9 37 70.3
Atru.chr4.2394 Acer truncatum HOM05D002305 ORTHO05D002528 5.3e-09 63.9 37 70.3
Cpa.g.sc44.121 Carica papaya HOM05D002305 ORTHO05D002528 5.3e-09 63.9 37 70.3
TWI09G1503 Tripterygium wilfordii HOM05D002305 ORTHO05D002528 5.3e-09 63.9 37 67.6
TAR362G0269 Trochodendron aralioides HOM05D002305 ORTHO05D002528 5.3e-09 63.9 35 77.1
Manes.03G173300 Manihot esculenta HOM05D002305 ORTHO05D002528 6.9e-09 63.5 35 77.1
Prupe.1G021100 Prunus persica HOM05D002305 ORTHO05D002528 6.9e-09 63.5 36 72.2
THA.LOC104803049 Tarenaya hassleriana HOM05D002305 ORTHO05D002528 6.9e-09 63.5 37 73.0
Aqoxy2G03462 Aquilegia oxysepala HOM05D002305 ORTHO05D002528 9.0e-09 63.2 35 74.3
CANSAT78G0735 Cannabis sativa HOM05D002305 ORTHO05D002528 9.0e-09 63.2 37 67.6
Ca_10852_v3 Cicer arietinum L. HOM05D002305 ORTHO05D002528 9.0e-09 63.2 37 70.3
PGSC0003DMG400036103 Solanum tuberosum HOM05D002305 ORTHO05D002528 9.0e-09 63.2 37 70.3
TPR.G26087 Trifolium pratense HOM05D002305 ORTHO05D002528 9.0e-09 63.2 37 70.3
GSVIVG01018040001 Vitis vinifera HOM05D002305 ORTHO05D002528 9.0e-09 63.2 49 55.1
CiPaw.01G195500 Carya illinoinensis HOM05D002305 ORTHO05D002528 1.2e-08 62.8 37 64.9
CiPaw.02G121000 Carya illinoinensis HOM05D002305 ORTHO05D002528 1.2e-08 62.8 47 53.2
Lj3A728T53 Lonicera japonica HOM05D002305 ORTHO05D002528 1.2e-08 62.8 35 74.3
Phvul.007G061700 Phaseolus vulgaris HOM05D002305 ORTHO05D002528 1.2e-08 62.8 37 67.6
PGR004G2750 Punica granatum HOM05D002305 ORTHO05D002528 1.2e-08 62.8 37 67.6
Sabra08G0119900 Salix brachista HOM05D002305 ORTHO05D002528 1.2e-08 62.8 45 57.8
VMungo0720G1441 Vigna mungo HOM05D002305 ORTHO05D002528 1.2e-08 62.8 37 67.6
AL7G41280 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 1.5e-08 62.4 35 74.3
Cc03_g04270 Coffea canephora HOM05D002305 ORTHO05D002528 1.5e-08 62.4 35 74.3
QL06p001008 Quercus lobata HOM05D002305 ORTHO05D002528 1.5e-08 62.4 36 69.4
Sc25g0004250 Simmondsia chinensis HOM05D002305 ORTHO05D002528 1.5e-08 62.4 37 70.3
TAR633G0825 Trochodendron aralioides HOM05D002305 ORTHO05D002528 1.5e-08 62.4 35 74.3
Carub.0007s2746 Capsella rubella HOM05D002305 ORTHO05D002528 2.0e-08 62.0 35 74.3
Carub.0007s2748 Capsella rubella HOM05D002305 ORTHO05D002528 2.0e-08 62.0 35 74.3
CARHR221180 Cardamine hirsuta HOM05D002305 ORTHO05D002528 2.0e-08 62.0 35 74.3
Eucgr.H03413 Eucalyptus grandis HOM05D002305 ORTHO05D002528 2.0e-08 62.0 37 67.6
MD16G1199600 Malus domestica HOM05D002305 ORTHO05D002528 2.0e-08 62.0 37 70.3
Aa31LG9G2650 Aethionema arabicum HOM05D002305 ORTHO05D002528 2.6e-08 61.6 35 71.4
AL7G41250 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 2.6e-08 61.6 35 74.3
ECA248G0970 Erigeron canadensis HOM05D002305 ORTHO05D002528 2.6e-08 61.6 35 74.3
Nn1g02449 Nelumbo nucifera HOM05D002305 ORTHO05D002528 2.6e-08 61.6 35 74.3
arahy.Tifrunner.gnm1.ann1.25NDHM Arachis hypogaea HOM05D002305 ORTHO05D002528 3.4e-08 61.2 37 64.9
arahy.Tifrunner.gnm1.ann1.5KYB4B Arachis hypogaea HOM05D002305 ORTHO05D002528 3.4e-08 61.2 37 64.9
arahy.Tifrunner.gnm1.ann1.E9249P Arachis hypogaea HOM05D002305 ORTHO05D002528 3.4e-08 61.2 36 69.4
Gohir.A02G034200 Gossypium hirsutum HOM05D002305 ORTHO05D002528 3.4e-08 61.2 35 71.4
AT4G14710 Arabidopsis thaliana HOM05D002305 ORTHO05D002528 4.5e-08 60.8 35 71.4
BcaNung00345 Brassica carinata HOM05D002305 ORTHO05D002528 4.5e-08 60.8 35 71.4
CSS0008467 Camellia sinensis var. sinensis HOM05D002305 ORTHO05D002528 4.5e-08 60.8 35 71.4
Sp7g12810 Schrenkiella parvula HOM05D002305 ORTHO05D002528 4.5e-08 60.8 35 71.4
Ah.13g071780 Amaranthus hybridus HOM05D002305 ORTHO05D002528 5.8e-08 60.5 36 69.4
arahy.Tifrunner.gnm1.ann1.4PTH1W Arachis hypogaea HOM05D002305 ORTHO05D002528 5.8e-08 60.5 36 66.7
COL.COLO4_21563 Corchorus olitorius HOM05D002305 ORTHO05D002528 5.8e-08 60.5 34 73.5
DCAR_002369 Daucus carota HOM05D002305 ORTHO05D002528 5.8e-08 60.5 35 71.4
Lsat_1_v5_gn_1_112921 Lactuca sativa HOM05D002305 ORTHO05D002528 5.8e-08 60.5 35 71.4
Gohir.D02G041000 Gossypium hirsutum HOM05D002305 ORTHO05D002528 7.6e-08 60.1 35 68.6
Gorai.005G045400 Gossypium raimondii HOM05D002305 ORTHO05D002528 7.6e-08 60.1 35 68.6
Hma1.2p1_0549F.1_g176990 Hydrangea macrophylla HOM05D002305 ORTHO05D002528 7.6e-08 60.1 35 68.6
Thecc.04G238400 Theobroma cacao HOM05D002305 ORTHO05D002528 7.6e-08 60.1 35 71.4
BcaC09g50141 Brassica carinata HOM05D002305 ORTHO05D002528 1.0e-07 59.7 35 68.6
A01p22970 Brassica napus HOM05D002305 ORTHO05D002528 1.0e-07 59.7 35 68.6
C01p28430 Brassica napus HOM05D002305 ORTHO05D002528 1.0e-07 59.7 35 68.6
BolC1t02784H Brassica oleracea HOM05D002305 ORTHO05D002528 1.0e-07 59.7 35 68.6
BraA01t02210Z Brassica rapa HOM05D002305 ORTHO05D002528 1.0e-07 59.7 35 68.6
AUR62038283 Chenopodium quinoa HOM05D002305 ORTHO05D002528 1.0e-07 59.7 36 66.7
DCAR_030685 Daucus carota HOM05D002305 ORTHO05D002528 1.0e-07 59.7 36 63.9
Thhalv10026306m.g Eutrema salsugineum HOM05D002305 ORTHO05D002528 1.0e-07 59.7 35 68.6
SalBow2G3369 Salvia bowleyana HOM05D002305 ORTHO05D002528 1.0e-07 59.7 43 58.1
CAN.G1437.5 Capsicum annuum HOM05D002305 ORTHO05D002528 1.3e-07 59.3 37 64.9
Duzib151G0376 Durio zibethinus HOM05D002305 ORTHO05D002528 1.3e-07 59.3 35 68.6
Duzib212G0094 Durio zibethinus HOM05D002305 ORTHO05D002528 1.3e-07 59.3 35 68.6
Lj6A645T39 Lonicera japonica HOM05D002305 ORTHO05D002528 1.3e-07 59.3 42 64.3
TAR369G0616 Trochodendron aralioides HOM05D002305 ORTHO05D002528 1.3e-07 59.3 35 68.6
AUR62034683 Chenopodium quinoa HOM05D002305 ORTHO05D002528 1.7e-07 58.9 36 66.7
MELO3C006502.2 Cucumis melo HOM05D002305 ORTHO05D002528 1.7e-07 58.9 36 66.7
TWI73G0730 Tripterygium wilfordii HOM05D002305 ORTHO05D002528 1.7e-07 58.9 37 62.2
Actinidia04512 Actinidia chinensis HOM05D002305 ORTHO05D002528 2.2e-07 58.5 35 71.4
MSTRG.9950 Avicennia marina HOM05D002305 ORTHO05D002528 2.2e-07 58.5 34 70.6
Thhalv10026305m.g Eutrema salsugineum HOM05D002305 ORTHO05D002528 2.2e-07 58.5 35 65.7
Lj5g0003854 Lotus japonicus HOM05D002305 ORTHO05D002528 2.2e-07 58.5 36 66.7
Medtr1g102870 Medicago truncatula HOM05D002305 ORTHO05D002528 2.2e-07 58.5 35 68.6
Eucgr.B01892 Eucalyptus grandis HOM05D002305 ORTHO05D002528 2.9e-07 58.2 36 63.9
RcHm_v2.0_Chr4g0387711 Rosa chinensis HOM05D002305 ORTHO05D002528 2.9e-07 58.2 45 55.6
ClCG05G004880 Citrullus lanatus HOM05D002305 ORTHO05D002528 3.8e-07 57.8 36 63.9
Eucgr.B01011 Eucalyptus grandis HOM05D002305 ORTHO05D002528 3.8e-07 57.8 36 61.1
EL10Ac3g06508 Beta vulgaris HOM05D002305 ORTHO05D002528 4.9e-07 57.4 36 66.7
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.9e-07 57.4 36 63.9
CsaV3_3G012920 Cucumis sativus L. HOM05D002305 ORTHO05D002528 4.9e-07 57.4 36 63.9
Eucgr.B01017 Eucalyptus grandis HOM05D002305 ORTHO05D002528 4.9e-07 57.4 34 67.6
AL4G19080 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 6.5e-07 57.0 35 65.7
CSS0041645 Camellia sinensis var. sinensis HOM05D002305 ORTHO05D002528 6.5e-07 57.0 48 56.2
AUR62003294 Chenopodium quinoa HOM05D002305 ORTHO05D002528 6.5e-07 57.0 36 66.7
ECA248G3333 Erigeron canadensis HOM05D002305 ORTHO05D002528 6.5e-07 57.0 34 70.6
PSO832G4296 Papaver somniferum HOM05D002305 ORTHO05D002528 6.5e-07 57.0 36 61.1
Peaxi162Scf00316g00065 Petunia axillaris HOM05D002305 ORTHO05D002528 6.5e-07 57.0 46 54.3
Sopen09g031490 Solanum pennellii HOM05D002305 ORTHO05D002528 6.5e-07 57.0 37 62.2
HPP92_020350 Vanilla planifolia HOM05D002305 ORTHO05D002528 8.4e-07 56.6 35 60.0
vmacro08369 Vaccinium macrocarpon HOM05D002305 ORTHO05D002528 1.1e-06 56.2 35 62.9
Zm00001eb004660 Zea mays HOM05D002305 ORTHO05D002528 1.1e-06 56.2 35 60.0
Rhsim04G0197400 Rhododendron simsii HOM05D002305 ORTHO05D002528 1.4e-06 55.8 35 65.7
Sed0009282 Sechium edule HOM05D002305 ORTHO05D002528 1.4e-06 55.8 36 61.1
Migut.G00382 Erythranthe guttata HOM05D002305 ORTHO05D002528 1.9e-06 55.5 34 64.7
unitig_748.g8328 Utricularia gibba HOM05D002305 ORTHO05D002528 1.9e-06 55.5 34 64.7
Sed0000250 Sechium edule HOM05D002305 ORTHO05D002528 2.5e-06 55.1 36 58.3
SGA_v2.0_scaffold191G40429 Striga asiatica HOM05D002305 ORTHO05D002528 2.5e-06 55.1 34 64.7
CARHR183550 Cardamine hirsuta HOM05D002305 ORTHO05D002528 3.2e-06 54.7 36 61.1
CDE02G4119 Ceratophyllum demersum HOM05D002305 ORTHO05D002528 3.2e-06 54.7 35 62.9
AT2G26400 Arabidopsis thaliana HOM05D002305 ORTHO05D002528 4.2e-06 54.3 34 61.8
MSTRG.21876 Avicennia marina HOM05D002305 ORTHO05D002528 5.5e-06 53.9 39 59.0
Os03g0161800 Oryza sativa ssp. japonica HOM05D002305 ORTHO05D002528 7.1e-06 53.5 35 57.1
Solyc09g082640.1 Solanum lycopersicum HOM05D002305 ORTHO05D002528 7.1e-06 53.5 36 58.3
PGSC0003DMG400017891 Solanum tuberosum HOM05D002305 ORTHO05D397983 9.3e-06 53.1 23 100.0


User provided reference genes

Program Settings