Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016062 Solanum tuberosum HOM05D000851 ORTHO05D003049 1.2e-71 273.1 136 100.0
PGSC0003DMG400029521 Solanum tuberosum HOM05D000851 ORTHO05D003049 1.2e-52 209.9 121 88.4
Sopen04g003000 Solanum pennellii HOM05D000851 ORTHO05D003049 9.6e-50 200.3 121 85.1
Solyc04g007870.3 Solanum lycopersicum HOM05D000851 ORTHO05D003049 3.6e-49 198.4 121 84.3
CAN.G699.2 Capsicum annuum HOM05D000851 ORTHO05D003049 2.2e-38 162.5 125 72.0
Nitab4.5_0010274g0010 Nicotiana tabacum HOM05D000851 ORTHO05D003049 7.9e-36 154.1 134 64.9
Nitab4.5_0000916g0120 Nicotiana tabacum HOM05D000851 ORTHO05D003049 3.3e-34 148.7 134 62.7
Peaxi162Scf00376g00130 Petunia axillaris HOM05D000851 ORTHO05D003049 3.3e-34 148.7 132 60.6
Peaxi162Scf00723g00421 Petunia axillaris HOM05D000851 ORTHO05D003049 4.3e-34 148.3 121 67.8
Dinv18617 Davidia involucrata HOM05D000851 ORTHO05D003049 1.7e-22 109.8 132 47.0
Dinv26233 Davidia involucrata HOM05D000851 ORTHO05D003049 1.7e-22 109.8 132 47.0
MSTRG.13607 Avicennia marina HOM05D000851 ORTHO05D003049 3.8e-22 108.6 133 49.6
Nitab4.5_0000089g0110 Nicotiana tabacum HOM05D000851 ORTHO05D003049 3.8e-22 108.6 126 53.2
Oeu054692.1 Olea europaea HOM05D000851 ORTHO05D003049 8.5e-22 107.5 141 47.5
Lj6A742G69 Lonicera japonica HOM05D000851 ORTHO05D003049 4.6e-20 101.7 120 50.8
Oeu059627.1 Olea europaea HOM05D000851 ORTHO05D003049 4.6e-20 101.7 126 49.2
Oeu014043.1 Olea europaea HOM05D000851 ORTHO05D003049 7.9e-20 100.9 132 46.2
MSTRG.2148 Avicennia marina HOM05D000851 ORTHO05D003049 2.3e-19 99.4 121 48.8
Duzib251G0412 Durio zibethinus HOM05D000851 ORTHO05D003049 6.7e-19 97.8 133 44.4
Duzib248G0058 Durio zibethinus HOM05D000851 ORTHO05D003049 1.1e-18 97.1 133 42.9
Nitab4.5_0000135g0030 Nicotiana tabacum HOM05D000851 ORTHO05D003049 1.5e-18 96.7 121 54.5
CSS0010645 Camellia sinensis var. sinensis HOM05D000851 ORTHO05D003049 2.5e-18 95.9 136 44.9
Thecc.02G287900 Theobroma cacao HOM05D000851 ORTHO05D003049 5.7e-18 94.7 112 48.2
Potri.008G132200 Populus trichocarpa HOM05D000851 ORTHO05D003049 7.4e-18 94.4 131 43.5
Sabra08G0100800 Salix brachista HOM05D000851 ORTHO05D003049 1.7e-17 93.2 112 49.1
HanXRQChr12g0363611 Helianthus annuus HOM05D000851 ORTHO05D003049 4.8e-17 91.7 138 39.9
CSS0019644 Camellia sinensis var. sinensis HOM05D000851 ORTHO05D003049 1.4e-16 90.1 107 49.5
ECA233G0179 Erigeron canadensis HOM05D000851 ORTHO05D003049 1.4e-16 90.1 138 37.0
Potri.010G109900 Populus trichocarpa HOM05D000851 ORTHO05D003049 1.8e-16 89.7 124 42.7
Actinidia36645 Actinidia chinensis HOM05D000851 ORTHO05D003049 3.1e-16 89.0 118 44.1
Manes.15G131400 Manihot esculenta HOM05D000851 ORTHO05D003049 3.1e-16 89.0 125 42.4
Gohir.D01G143100 Gossypium hirsutum HOM05D000851 ORTHO05D003049 2.0e-15 86.3 131 42.0
Actinidia12375 Actinidia chinensis HOM05D000851 ORTHO05D003049 2.6e-15 85.9 118 44.9
Duzib268G0392 Durio zibethinus HOM05D000851 ORTHO05D003049 3.4e-15 85.5 112 46.4
Gohir.A01G150000 Gossypium hirsutum HOM05D000851 ORTHO05D003049 4.5e-15 85.1 131 41.2
Cc11_g08230 Coffea canephora HOM05D000851 ORTHO05D003049 1.3e-14 83.6 112 45.5
COL.COLO4_13096 Corchorus olitorius HOM05D000851 ORTHO05D003049 1.7e-14 83.2 131 44.3
DCAR_030242 Daucus carota HOM05D000851 ORTHO05D003049 1.7e-14 83.2 112 48.2
Sabra10G0080300 Salix brachista HOM05D000851 ORTHO05D003049 1.7e-14 83.2 124 40.3
Lsat_1_v5_gn_8_44360 Lactuca sativa HOM05D000851 ORTHO05D003049 2.2e-14 82.8 130 38.5
QL03p033946 Quercus lobata HOM05D000851 ORTHO05D003049 2.2e-14 82.8 111 45.0
Dinv28048 Davidia involucrata HOM05D000851 ORTHO05D003049 2.9e-14 82.4 130 42.3
Haze_10939 Corylus avellana HOM05D000851 ORTHO05D003049 5.0e-14 81.6 112 42.9
Gorai.002G176500 Gossypium raimondii HOM05D000851 ORTHO05D003049 5.0e-14 81.6 130 41.5
CiPaw.05G193600 Carya illinoinensis HOM05D000851 ORTHO05D003049 1.4e-13 80.1 111 42.3
Gohir.D02G142400 Gossypium hirsutum HOM05D000851 ORTHO05D003049 1.4e-13 80.1 132 40.9
CAN.G1241.14 Capsicum annuum HOM05D000851 ORTHO05D003049 1.9e-13 79.7 117 46.2
FvH4_4g34051 Fragaria vesca HOM05D000851 ORTHO05D003049 2.5e-13 79.3 125 41.6
FAN12G2731 Fragaria x ananassa HOM05D000851 ORTHO05D003049 2.5e-13 79.3 125 41.6
Gohir.A03G119100 Gossypium hirsutum HOM05D000851 ORTHO05D003049 3.2e-13 79.0 132 40.2
MD16G1022600 Malus domestica HOM05D000851 ORTHO05D003049 3.2e-13 79.0 129 40.3
Hma1.2p1_0330F.1_g127460 Hydrangea macrophylla HOM05D000851 ORTHO05D003049 5.5e-13 78.2 127 42.5
Rhsim09G0093500 Rhododendron simsii HOM05D000851 ORTHO05D003049 5.5e-13 78.2 120 43.3
Cfa014984 Carpinus fangiana HOM05D000851 ORTHO05D003049 7.2e-13 77.8 112 42.9
Gorai.005G159900 Gossypium raimondii HOM05D000851 ORTHO05D003049 7.2e-13 77.8 132 40.2
FAN22G0251 Fragaria x ananassa HOM05D000851 ORTHO05D003049 1.6e-12 76.6 125 41.6
FAN17G3037 Fragaria x ananassa HOM05D000851 ORTHO05D003049 2.1e-12 76.3 125 41.6
Glyma.08G094900 Glycine max HOM05D000851 ORTHO05D003049 2.1e-12 76.3 122 41.0
HanXRQChr08g0212561 Helianthus annuus HOM05D000851 ORTHO05D003049 2.1e-12 76.3 122 37.7
Prupe.1G330400 Prunus persica HOM05D000851 ORTHO05D003049 2.1e-12 76.3 128 39.1
RcHm_v2.0_Chr4g0443551 Rosa chinensis HOM05D000851 ORTHO05D003049 2.7e-12 75.9 121 41.3
MD13G1021300 Malus domestica HOM05D000851 ORTHO05D003049 3.6e-12 75.5 127 37.8
Glyma.05G139600 Glycine max HOM05D000851 ORTHO05D003049 4.7e-12 75.1 133 39.8
Atru.chr11.638 Acer truncatum HOM05D000851 ORTHO05D003049 3.9e-11 72.0 118 42.4
Cpa.g.sc2.234 Carica papaya HOM05D000851 ORTHO05D003049 3.9e-11 72.0 128 39.8
TPR.G5109 Trifolium pratense HOM05D000851 ORTHO05D003049 3.9e-11 72.0 135 40.7
AUR62028611 Chenopodium quinoa HOM05D000851 ORTHO05D003049 5.1e-11 71.6 120 38.3
Ciclev10014119m.g Citrus clementina HOM05D000851 ORTHO05D003049 5.1e-11 71.6 113 40.7
DCAR_007314 Daucus carota HOM05D000851 ORTHO05D003049 5.1e-11 71.6 115 40.0
Lj4g0012513 Lotus japonicus HOM05D000851 ORTHO05D003049 6.7e-11 71.2 134 39.6
Lj3C866T18 Lonicera japonica HOM05D000851 ORTHO05D003049 8.8e-11 70.9 118 44.9
Ca_11590_v3 Cicer arietinum L. HOM05D000851 ORTHO05D003049 1.5e-10 70.1 137 39.4
Lalb_Chr00c06g0404651 Lupinus albus HOM05D000851 ORTHO05D003049 1.5e-10 70.1 131 39.7
Lalb_Chr13g0293701 Lupinus albus HOM05D000851 ORTHO05D003049 1.5e-10 70.1 131 39.7
TWI77G0794 Tripterygium wilfordii HOM05D000851 ORTHO05D003049 1.5e-10 70.1 124 41.9
TAR371G0372 Trochodendron aralioides HOM05D000851 ORTHO05D003049 1.5e-10 70.1 132 35.6
SalBow2G0267 Salvia bowleyana HOM05D000851 ORTHO05D003049 2.0e-10 69.7 117 39.3
vmacro10670 Vaccinium macrocarpon HOM05D000851 ORTHO05D003049 2.0e-10 69.7 118 41.5
CiPaw.06G048800 Carya illinoinensis HOM05D000851 ORTHO05D003049 2.6e-10 69.3 124 39.5
HanXRQChr16g0529831 Helianthus annuus HOM05D000851 ORTHO05D003049 3.3e-10 68.9 131 38.9
AUR62032336 Chenopodium quinoa HOM05D000851 ORTHO05D003049 4.4e-10 68.6 120 37.5
Sed0017331 Sechium edule HOM05D000851 ORTHO05D003049 5.7e-10 68.2 134 38.1
Phvul.002G183000 Phaseolus vulgaris HOM05D000851 ORTHO05D003049 7.4e-10 67.8 107 42.1
TAR629G0701 Trochodendron aralioides HOM05D000851 ORTHO05D003049 1.3e-09 67.0 107 43.9
ECA234G1132 Erigeron canadensis HOM05D000851 ORTHO05D003049 4.8e-09 65.1 130 36.2
Lalb_Chr07g0187751 Lupinus albus HOM05D000851 ORTHO05D003049 4.8e-09 65.1 127 40.9
VMungo0251G2314 Vigna mungo HOM05D000851 ORTHO05D003049 6.3e-09 64.7 135 38.5
EL10Ac5g10559 Beta vulgaris HOM05D000851 ORTHO05D003049 8.2e-09 64.3 122 37.7
CDE05G3084 Ceratophyllum demersum HOM05D000851 ORTHO05D003049 8.2e-09 64.3 117 40.2
MBI12_g08775_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003049 8.2e-09 64.3 103 44.7
Psat7g082760 Pisum sativum HOM05D000851 ORTHO05D003049 8.2e-09 64.3 136 38.2
Sed0002349 Sechium edule HOM05D000851 ORTHO05D003049 1.1e-08 63.9 111 41.4
Sc14g0006250 Simmondsia chinensis HOM05D000851 ORTHO05D003049 1.4e-08 63.5 116 41.4
Sc14g0007010 Simmondsia chinensis HOM05D000851 ORTHO05D003049 1.4e-08 63.5 116 41.4
Eucgr.G02159 Eucalyptus grandis HOM05D000851 ORTHO05D003049 2.4e-08 62.8 120 40.8
CANSAT01G2099 Cannabis sativa HOM05D000851 ORTHO05D003049 3.1e-08 62.4 117 37.6
Migut.E00449 Erythranthe guttata HOM05D000851 ORTHO05D003049 4.1e-08 62.0 134 39.6
SGA_v2.0_scaffold151G36741 Striga asiatica HOM05D000851 ORTHO05D003049 7.0e-08 61.2 125 36.0
Manes.17G080700 Manihot esculenta HOM05D000851 ORTHO05D003049 9.1e-08 60.8 130 35.4
Hund09498 Selenicereus undatus HOM05D000851 ORTHO05D003049 9.1e-08 60.8 103 39.8
THA.LOC104822999 Tarenaya hassleriana HOM05D000851 ORTHO05D003049 1.2e-07 60.5 115 40.0
CDE05G0739 Ceratophyllum demersum HOM05D000851 ORTHO05D003049 1.5e-07 60.1 98 44.9
CsaV3_5G028320 Cucumis sativus L. HOM05D000851 ORTHO05D003049 1.5e-07 60.1 119 39.5
HanXRQChr17g0567391 Helianthus annuus HOM05D000851 ORTHO05D003049 2.0e-07 59.7 50 54.0
PSO017G6941 Papaver somniferum HOM05D000851 ORTHO05D003049 2.6e-07 59.3 118 37.3
GSVIVG01011703001 Vitis vinifera HOM05D000851 ORTHO05D003049 2.6e-07 59.3 104 38.5
MELO3C005294.2 Cucumis melo HOM05D000851 ORTHO05D003049 3.4e-07 58.9 114 41.2
Oeu062631.3 Olea europaea HOM05D000851 ORTHO05D003049 4.5e-07 58.5 61 45.9
Sp5g25930 Schrenkiella parvula HOM05D000851 ORTHO05D003049 4.5e-07 58.5 115 40.9
ClCG01G006360 Citrullus lanatus HOM05D000851 ORTHO05D003049 7.7e-07 57.8 115 40.9
Eucgr.J01598 Eucalyptus grandis HOM05D000851 ORTHO05D003049 7.7e-07 57.8 129 34.1
TAR622G1439 Trochodendron aralioides HOM05D000851 ORTHO05D003049 7.7e-07 57.8 110 36.4
BcaC08g46514 Brassica carinata HOM05D000851 ORTHO05D003049 1.3e-06 57.0 115 40.9
C06p44820 Brassica napus HOM05D000851 ORTHO05D003049 1.3e-06 57.0 115 40.9
BolC6t39541H Brassica oleracea HOM05D000851 ORTHO05D003049 1.3e-06 57.0 115 40.9
Lsat_1_v5_gn_3_55560 Lactuca sativa HOM05D000851 ORTHO05D003049 1.3e-06 57.0 97 41.2
A07p37150 Brassica napus HOM05D000851 ORTHO05D003049 1.7e-06 56.6 115 40.0
AT1G70750 Arabidopsis thaliana HOM05D000851 ORTHO05D003049 2.2e-06 56.2 115 40.0
arahy.Tifrunner.gnm1.ann1.GY5DEF Arachis hypogaea HOM05D000851 ORTHO05D003049 2.2e-06 56.2 131 35.9
BraA07t31277Z Brassica rapa HOM05D000851 ORTHO05D003049 2.2e-06 56.2 115 40.0
AL2G30190 Arabidopsis lyrata HOM05D000851 ORTHO05D003049 2.9e-06 55.8 112 40.2
arahy.Tifrunner.gnm1.ann1.I9FPTI Arachis hypogaea HOM05D000851 ORTHO05D003049 3.8e-06 55.5 131 35.9
MBI19_g02464_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003049 5.0e-06 55.1 149 34.2
MBI19_g46595_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003049 6.5e-06 54.7 115 38.3
PSO478G3293 Papaver somniferum HOM05D000851 ORTHO05D003049 6.5e-06 54.7 119 37.0
Phvul.003G021800 Phaseolus vulgaris HOM05D000851 ORTHO05D003049 6.5e-06 54.7 109 38.5
Thhalv10018172m.g Eutrema salsugineum HOM05D000851 ORTHO05D003049 8.5e-06 54.3 116 39.7


User provided reference genes

Program Settings