Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016017 Solanum tuberosum HOM05D007615 ORTHO05D009643 1.8e-105 386.0 194 100.0
Sopen04g004760 Solanum pennellii HOM05D007615 ORTHO05D009643 6.1e-98 360.9 194 93.8
Nitab4.5_0001654g0050 Nicotiana tabacum HOM05D007615 ORTHO05D009643 9.4e-67 257.3 197 70.6
Nitab4.5_0000737g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 7.0e-54 214.5 137 80.3
CiPaw.01G296100 Carya illinoinensis HOM05D007615 ORTHO05D009643 7.7e-53 211.1 193 53.4
TAR636G2052 Trochodendron aralioides HOM05D007615 ORTHO05D009643 3.8e-52 208.8 194 53.1
QL08p062684 Quercus lobata HOM05D007615 ORTHO05D009643 1.1e-51 207.2 192 54.7
Sabra10G0147900 Salix brachista HOM05D007615 ORTHO05D009643 4.3e-51 205.3 192 52.6
CANSAT56G1044 Cannabis sativa HOM05D007615 ORTHO05D009643 9.5e-51 204.1 193 54.4
Potri.010G192300 Populus trichocarpa HOM05D007615 ORTHO05D009643 1.6e-50 203.4 192 53.6
TAR636G3510 Trochodendron aralioides HOM05D007615 ORTHO05D009643 1.6e-50 203.4 195 52.3
Eucgr.K02662 Eucalyptus grandis HOM05D007615 ORTHO05D009643 1.0e-49 200.7 192 53.6
Ciclev10032806m.g Citrus clementina HOM05D007615 ORTHO05D009643 3.0e-49 199.1 193 51.8
Cpa.g.sc19.199 Carica papaya HOM05D007615 ORTHO05D009643 7.5e-48 194.5 193 52.8
ECA238G0429 Erigeron canadensis HOM05D007615 ORTHO05D009643 7.5e-48 194.5 191 51.3
Rhsim09G0172300 Rhododendron simsii HOM05D007615 ORTHO05D009643 1.3e-47 193.7 193 51.3
vmacro10061 Vaccinium macrocarpon HOM05D007615 ORTHO05D009643 6.4e-47 191.4 193 50.3
ClCG11G006310 Citrullus lanatus HOM05D007615 ORTHO05D009643 1.1e-46 190.7 194 48.5
Dinv20960 Davidia involucrata HOM05D000277 ORTHO05D000214 1.1e-46 190.7 170 55.3
Dinv20983 Davidia involucrata HOM05D000277 ORTHO05D000214 1.1e-46 190.7 170 55.3
TWI53G1973 Tripterygium wilfordii HOM05D007615 ORTHO05D009643 1.1e-46 190.7 192 52.1
MELO3C008283.2 Cucumis melo HOM05D007615 ORTHO05D009643 1.8e-46 189.9 195 48.2
Cc02_g06860 Coffea canephora HOM05D007615 ORTHO05D009643 3.2e-46 189.1 194 51.5
Haze_17188 Corylus avellana HOM05D007615 ORTHO05D009643 4.1e-46 188.7 191 52.4
Phvul.008G225800 Phaseolus vulgaris HOM05D007615 ORTHO05D009643 5.9e-45 184.9 195 48.2
Sed0010184 Sechium edule HOM05D007615 ORTHO05D009643 5.9e-45 184.9 193 47.7
CsaV3_6G001660 Cucumis sativus L. HOM05D007615 ORTHO05D009643 1.0e-44 184.1 195 47.2
PGR142G0690 Punica granatum HOM05D007615 ORTHO05D009643 1.3e-44 183.7 199 48.7
Psat2g035440 Pisum sativum HOM05D007615 ORTHO05D009643 1.7e-44 183.3 199 47.2
Actinidia00935 Actinidia chinensis HOM05D007615 ORTHO05D009643 2.3e-44 183.0 191 48.2
HanXRQChr07g0202461 Helianthus annuus HOM05D007615 ORTHO05D009643 8.6e-44 181.0 191 51.3
MD07G1214900 Malus domestica HOM05D007615 ORTHO05D009643 8.6e-44 181.0 193 48.7
CSS0034825 Camellia sinensis var. sinensis HOM05D007615 ORTHO05D009643 1.1e-43 180.6 164 55.5
Glyma.14G061700 Glycine max HOM05D007615 ORTHO05D009643 1.5e-43 180.3 195 48.2
COL.COLO4_24429 Corchorus olitorius HOM05D007615 ORTHO05D009643 1.9e-43 179.9 194 47.4
Lalb_Chr17g0346631 Lupinus albus HOM05D007615 ORTHO05D009643 1.9e-43 179.9 190 48.9
Atru.chr12.235 Acer truncatum HOM05D007615 ORTHO05D009643 5.6e-43 178.3 194 47.9
Aqoxy4G02652 Aquilegia oxysepala HOM05D007615 ORTHO05D009643 5.6e-43 178.3 199 46.2
Manes.07G125900 Manihot esculenta HOM05D007615 ORTHO05D009643 5.6e-43 178.3 136 59.6
Prupe.2G246900 Prunus persica HOM05D007615 ORTHO05D009643 9.5e-43 177.6 195 46.7
Sc11g0007250 Simmondsia chinensis HOM05D007615 ORTHO05D009643 1.2e-42 177.2 195 45.6
Thecc.09G179400 Theobroma cacao HOM05D007615 ORTHO05D009643 1.2e-42 177.2 198 49.0
LjContig00357g0021515 Lotus japonicus HOM05D007615 ORTHO05D009643 2.8e-42 176.0 196 45.4
Gohir.A08G018800 Gossypium hirsutum HOM05D007615 ORTHO05D009643 8.0e-42 174.5 195 47.2
Gohir.D08G029400 Gossypium hirsutum HOM05D007615 ORTHO05D009643 8.0e-42 174.5 195 46.7
Gorai.004G026800 Gossypium raimondii HOM05D007615 ORTHO05D009643 8.0e-42 174.5 195 46.7
Cfa001360 Carpinus fangiana HOM05D007615 ORTHO05D009643 1.0e-41 174.1 161 54.0
Nn2g11402 Nelumbo nucifera HOM05D007615 ORTHO05D009643 1.4e-41 173.7 184 48.4
EL10Ac2g04791 Beta vulgaris HOM05D007615 ORTHO05D009643 2.3e-41 172.9 136 58.8
Medtr5g081970 Medicago truncatula HOM05D007615 ORTHO05D009643 3.1e-41 172.6 196 44.4
VMungo0647G1713 Vigna mungo HOM05D007615 ORTHO05D009643 5.2e-41 171.8 181 47.5
PSO384G4204 Papaver somniferum HOM05D007615 ORTHO05D009643 1.2e-40 170.6 187 46.0
DCAR_012632 Daucus carota HOM05D007615 ORTHO05D009643 1.5e-40 170.2 136 61.0
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 2.0e-40 169.9 196 45.9
PSO339G1281 Papaver somniferum HOM05D007615 ORTHO05D009643 2.0e-40 169.9 196 43.9
Ca_05936_v3 Cicer arietinum L. HOM05D007615 ORTHO05D009643 2.6e-40 169.5 193 46.1
RcHm_v2.0_Chr1g0369501 Rosa chinensis HOM05D007615 ORTHO05D009643 1.3e-39 167.2 196 47.4
Psat3g208000 Pisum sativum HOM05D007615 ORTHO05D009643 2.2e-39 166.4 137 57.7
Duzib170G1068 Durio zibethinus HOM05D007615 ORTHO05D009643 2.9e-39 166.0 142 57.0
SalBow6G0125 Salvia bowleyana HOM05D007615 ORTHO05D009643 2.9e-39 166.0 179 48.6
Ah.16g103150 Amaranthus hybridus HOM05D007615 ORTHO05D009643 3.7e-39 165.6 175 50.9
Peaxi162Scf00079g00249 Petunia axillaris HOM05D007615 ORTHO05D009643 4.9e-39 165.2 116 72.4
Oeu063511.1 Olea europaea HOM05D007615 ORTHO05D009643 8.3e-39 164.5 136 61.0
Hund13833 Selenicereus undatus HOM05D007615 ORTHO05D009643 1.1e-38 164.1 169 49.1
FAN01G2468 Fragaria x ananassa HOM05D007615 ORTHO05D009643 9.2e-38 161.0 137 58.4
Lsat_1_v5_gn_2_121681 Lactuca sativa HOM05D000277 ORTHO05D000214 3.5e-37 159.1 166 51.8
FAN06G4073 Fragaria x ananassa HOM05D007615 ORTHO05D009643 4.6e-37 158.7 132 59.1
FAN10G2819 Fragaria x ananassa HOM05D007615 ORTHO05D009643 4.6e-37 158.7 137 57.7
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 7.8e-37 157.9 185 44.9
Migut.F01421 Erythranthe guttata HOM05D007615 ORTHO05D009643 3.0e-36 156.0 198 46.0
TPR.G19858 Trifolium pratense HOM05D007615 ORTHO05D009643 6.6e-36 154.8 209 42.1
FAN03G2533 Fragaria x ananassa HOM05D007615 ORTHO05D009643 8.6e-36 154.5 137 57.7
unitig_62.g23933 Utricularia gibba HOM05D007615 ORTHO05D009643 1.5e-35 153.7 184 41.8
A09p48810 Brassica napus HOM05D007615 ORTHO05D009643 1.2e-34 150.6 197 43.1
BraA09t40334Z Brassica rapa HOM05D007615 ORTHO05D009643 1.2e-34 150.6 197 43.1
Aa31LG10G10810 Aethionema arabicum HOM05D007615 ORTHO05D009643 1.6e-34 150.2 193 40.9
AT3G55820 Arabidopsis thaliana HOM05D007615 ORTHO05D009643 6.2e-34 148.3 196 39.3
THA.LOC104810077 Tarenaya hassleriana HOM05D007615 ORTHO05D009643 6.2e-34 148.3 192 42.2
Sp5g06670 Schrenkiella parvula HOM05D007615 ORTHO05D009643 2.3e-33 146.4 191 40.3
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 4.0e-33 145.6 177 44.6
C08p31140 Brassica napus HOM05D007615 ORTHO05D009643 6.8e-33 144.8 201 41.8
Thhalv10010736m.g Eutrema salsugineum HOM05D007615 ORTHO05D009643 8.9e-33 144.4 191 41.4
BolC8t50735H Brassica oleracea HOM05D007615 ORTHO05D009643 2.6e-32 142.9 201 41.3
CARHR165930 Cardamine hirsuta HOM05D007615 ORTHO05D009643 3.4e-32 142.5 205 37.1
AL5G37110 Arabidopsis lyrata HOM05D007615 ORTHO05D009643 7.5e-32 141.4 197 38.6
SEGI_38309 Sequoiadendron giganteum HOM05D007615 ORTHO05D009643 2.9e-31 139.4 210 38.6
Carub.0005s2260 Capsella rubella HOM05D007615 ORTHO05D009643 3.7e-31 139.0 197 37.1
Dinv34419 Davidia involucrata HOM05D007615 ORTHO05D009643 5.4e-30 135.2 189 41.8
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.2e-29 134.0 164 45.1
CDE10G1314 Ceratophyllum demersum HOM05D007615 ORTHO05D009643 2.7e-29 132.9 143 44.8
Nitab4.5_0002613g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 1.0e-28 131.0 78 83.3
HPP92_006631 Vanilla planifolia HOM05D007615 ORTHO05D009643 9.5e-27 124.4 135 48.9
RcHm_v2.0_Chr3g0468601 Rosa chinensis HOM05D007615 ORTHO05D009643 1.1e-25 120.9 190 41.1
BcaB01g00059 Brassica carinata HOM05D007615 ORTHO05D009643 3.1e-25 119.4 192 38.5
Potri.008G065101 Populus trichocarpa HOM05D007615 ORTHO05D009643 6.8e-25 118.2 139 43.9
Mapoly0011s0100 Marchantia polymorpha HOM05D007615 ORTHO05D009643 6.0e-21 105.1 208 30.3
Oeu046579.1 Olea europaea HOM05D007615 ORTHO05D009643 7.8e-21 104.8 121 47.1
Pp3c3_19950 Physcomitrium patens HOM05D007615 ORTHO05D009643 3.4e-16 89.4 142 34.5
SMO139G0141 Selaginella moellendorffii HOM05D007615 ORTHO05D009643 3.8e-15 85.9 139 35.3
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 1.9e-14 83.6 139 34.5
AagrBONN_evm.TU.Sc2ySwM_368.2678 Anthoceros agrestis HOM05D007615 ORTHO05D009643 3.2e-14 82.8 87 44.8
Manes.10G016915 Manihot esculenta HOM05D007615 ORTHO05D009643 3.0e-12 76.3 118 35.6
Lalb_Chr04g0250741 Lupinus albus HOM05D007615 ORTHO05D009643 1.9e-06 57.0 44 56.8


User provided reference genes

Program Settings