Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.5e-209 730.7 365 100.0
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 3.1e-87 326.2 210 80.5
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.9e-76 290.4 157 93.0
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.3e-72 277.7 155 88.4
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.2e-72 275.0 155 88.4
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.8e-71 273.9 153 88.9
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.4e-63 247.7 158 79.7
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.8e-63 247.3 155 79.4
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.3e-61 241.1 155 77.4
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 8.5e-61 238.4 155 77.4
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.1e-60 238.0 155 78.1
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.9e-60 237.3 155 77.4
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-59 234.6 155 77.4
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 3.4e-57 226.5 158 69.0
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 7.5e-57 225.3 158 68.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.1e-55 221.5 158 69.6
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 3.1e-55 219.9 192 58.9
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.5e-54 216.1 155 67.7
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.5e-54 216.1 155 67.7
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 4.5e-54 216.1 155 68.4
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 5.9e-54 215.7 162 66.0
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.0e-53 214.9 155 66.5
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.0e-53 214.9 192 55.7
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.3e-53 214.5 155 68.4
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.7e-53 214.2 152 67.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.2e-53 213.8 155 67.1
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.9e-53 213.4 155 66.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.9e-53 213.4 155 66.5
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 8.5e-53 211.8 153 66.7
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 3.2e-52 209.9 158 66.5
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.2e-52 209.9 205 53.2
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 7.2e-52 208.8 153 65.4
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 7.2e-52 208.8 153 65.4
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.2e-51 208.0 155 65.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.2e-51 208.0 155 65.2
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 1.2e-51 208.0 155 66.5
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.6e-51 207.6 161 64.0
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.6e-51 207.6 155 62.6
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.6e-51 207.6 154 64.9
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.1e-51 207.2 153 64.7
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.7e-51 206.8 155 65.8
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 2.7e-51 206.8 166 62.7
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 4.7e-51 206.1 154 66.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.0e-50 204.9 155 64.5
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.0e-50 204.9 156 65.4
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.0e-50 204.9 155 63.2
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.4e-50 204.5 158 63.3
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.4e-50 204.5 155 64.5
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.0e-50 203.0 155 63.2
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.8e-50 202.2 153 63.4
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 6.8e-50 202.2 153 61.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 8.8e-50 201.8 155 61.9
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 8.8e-50 201.8 155 63.9
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 8.8e-50 201.8 155 66.5
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 8.8e-50 201.8 154 66.9
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.2e-49 201.4 155 63.9
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.2e-49 201.4 153 62.7
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.6e-49 200.3 156 62.8
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 4.4e-49 199.5 155 62.6
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.2e-48 197.2 155 62.6
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 2.2e-48 197.2 155 63.2
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.8e-48 196.8 155 59.4
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 8.3e-48 195.3 155 62.6
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.1e-47 193.4 154 61.7
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 4.1e-47 193.0 155 58.7
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 5.4e-47 192.6 155 60.0
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 5.4e-47 192.6 155 58.1
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 7.0e-47 192.2 155 60.0
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.6e-46 191.0 153 60.8
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.6e-46 191.0 155 62.6
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.6e-46 191.0 155 62.6
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.0e-46 190.7 155 58.7
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.7e-46 190.3 154 63.0
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.7e-46 190.3 155 60.0
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 2.7e-46 190.3 155 60.0
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.5e-46 189.9 155 62.6
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 4.5e-46 189.5 164 58.5
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.5e-46 189.5 155 61.9
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.5e-46 189.5 155 60.0
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 5.9e-46 189.1 164 56.1
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 5.9e-46 189.1 161 57.8
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 5.9e-46 189.1 162 55.6
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 7.7e-46 188.7 164 56.1
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.0e-45 188.3 155 59.4
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.3e-45 188.0 155 59.4
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.7e-45 187.6 154 59.1
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.3e-45 187.2 156 59.0
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.9e-45 186.8 155 59.4
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.8e-45 186.4 155 56.1
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 3.8e-45 186.4 156 59.6
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 5.0e-45 186.0 155 58.7
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 5.0e-45 186.0 155 58.7
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 6.6e-45 185.7 155 58.1
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 8.6e-45 185.3 155 58.7
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 8.6e-45 185.3 155 58.7
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.1e-44 184.9 156 59.0
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.5e-44 184.5 155 59.4
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.5e-44 184.5 155 58.1
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.3e-44 183.3 155 59.4
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 3.3e-44 183.3 155 59.4
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 4.3e-44 183.0 155 59.4
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 7.3e-44 182.2 155 58.1
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 7.3e-44 182.2 156 57.7
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.2e-43 181.4 155 58.7
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.6e-43 181.0 164 56.7
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.6e-43 181.0 164 56.7
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.6e-43 181.0 155 56.8
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.6e-43 181.0 155 56.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.8e-43 180.3 155 57.4
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.8e-43 180.3 155 58.7
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 3.6e-43 179.9 157 56.7
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 4.7e-43 179.5 158 55.7
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 4.7e-43 179.5 157 57.3
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 8.0e-43 178.7 155 56.1
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 8.0e-43 178.7 155 56.8
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 8.0e-43 178.7 155 56.8
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 8.0e-43 178.7 155 56.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 8.0e-43 178.7 155 56.8
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.3e-42 177.2 155 55.5
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 3.4e-41 173.3 150 55.3
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.2e-40 170.6 192 47.9
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.2e-40 170.6 178 50.6
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.2e-40 170.6 172 52.9
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 2.9e-40 170.2 189 48.7
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 6.4e-40 169.1 155 53.5
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.4e-39 167.9 155 55.5
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 4.1e-39 166.4 193 46.1
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-38 164.9 152 56.6
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.6e-38 164.5 152 55.3
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.0e-38 164.1 267 37.8
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.0e-37 161.8 147 55.8
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.0e-37 160.2 153 49.7
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 6.6e-37 159.1 120 69.2
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-36 158.3 105 70.5
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 2.1e-35 154.1 164 51.2
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.8e-35 153.7 196 45.9
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.7e-35 152.9 110 66.4
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.0e-35 152.1 108 67.6
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.0e-34 151.8 108 65.7
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.8e-34 151.0 153 51.0
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.3e-34 150.6 108 66.7
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.2e-34 149.4 107 67.3
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.2e-34 149.4 108 65.7
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.8e-34 149.1 108 66.7
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-32 144.4 150 52.7
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.6e-30 137.9 98 68.4
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 4.6e-30 136.3 153 45.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.3e-29 134.8 155 42.6
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.5e-28 130.6 165 41.2
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.5e-28 130.6 158 43.7
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 3.6e-27 126.7 152 40.1
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.6e-27 126.7 155 42.6
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.2e-26 122.9 152 46.1
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.8e-25 119.4 155 40.6
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.7e-24 117.9 155 41.3
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.2e-24 117.5 155 43.9
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.1e-23 112.5 155 41.3
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.7e-21 107.8 155 36.1
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 3.6e-19 100.1 265 29.4
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 4.7e-19 99.8 69 69.6
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.2e-18 96.3 109 44.0
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 5.2e-18 96.3 164 36.0
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.3e-16 91.7 154 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 7.3e-12 75.9 151 35.8
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 2.8e-11 73.9 76 46.1
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.8e-10 69.3 44 72.7
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.8e-10 69.3 44 72.7
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.3e-08 65.1 44 65.9
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.5e-06 57.0 44 52.3


User provided reference genes

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