Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 4.4e-33 144.1 73 100.0
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 1.5e-25 119.0 61 96.7
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 1.5e-25 119.0 61 96.7
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 4.9e-16 87.4 51 82.4
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 3.2e-15 84.7 43 90.7
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 1.7e-13 79.0 68 60.3
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 2.9e-13 78.2 58 70.7
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 8.6e-13 76.6 62 66.1
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 8.6e-13 76.6 62 66.1
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 5.6e-12 73.9 55 67.3
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 9.5e-12 73.2 58 65.5
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 2.1e-11 72.0 67 62.7
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 2.1e-11 72.0 56 62.5
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 2.8e-11 71.6 68 61.8
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 3.6e-11 71.2 58 62.1
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 3.6e-11 71.2 39 82.1
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 4.7e-11 70.9 59 59.3
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 4.7e-11 70.9 43 81.4
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 4.7e-11 70.9 65 60.0
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 6.1e-11 70.5 52 67.3
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 8.0e-11 70.1 48 68.8
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 1.0e-10 69.7 57 61.4
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 1.4e-10 69.3 53 67.9
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 1.4e-10 69.3 68 54.4
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 1.4e-10 69.3 45 68.9
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 1.4e-10 69.3 72 54.2
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 2.3e-10 68.6 51 68.6
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 2.3e-10 68.6 57 59.6
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 2.3e-10 68.6 41 73.2
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 3.1e-10 68.2 57 57.9
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 3.1e-10 68.2 52 65.4
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 4.0e-10 67.8 67 56.7
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 4.0e-10 67.8 65 55.4
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 4.0e-10 67.8 59 57.6
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 4.0e-10 67.8 61 59.0
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 4.0e-10 67.8 41 73.2
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 5.2e-10 67.4 40 75.0
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 5.2e-10 67.4 41 73.2
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 5.2e-10 67.4 58 56.9
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 8.9e-10 66.6 40 70.0
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 8.9e-10 66.6 47 66.0
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 8.9e-10 66.6 51 66.7
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 8.9e-10 66.6 55 60.0
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.2e-09 66.2 48 62.5
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.2e-09 66.2 48 62.5
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 1.5e-09 65.9 64 53.1
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 1.5e-09 65.9 53 60.4
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 2.0e-09 65.5 35 82.9
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 2.0e-09 65.5 54 57.4
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 2.6e-09 65.1 51 64.7
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 3.4e-09 64.7 68 52.9
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 4.4e-09 64.3 50 68.0
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 4.4e-09 64.3 45 64.4
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 4.4e-09 64.3 45 64.4
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 4.4e-09 64.3 61 54.1
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 9.8e-09 63.2 60 53.3
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 1.3e-08 62.8 63 52.4
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 1.7e-08 62.4 63 50.8
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 1.7e-08 62.4 63 52.4
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 2.2e-08 62.0 38 71.1
Pp3c4_4750 Physcomitrium patens HOM05D008240 ORTHO05D010333 4.6e-06 54.3 40 60.0
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 6.0e-06 53.9 59 54.2


User provided reference genes

Program Settings