Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 0.0e+00 1334.3 708 100.0
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 0.0e+00 1305.4 708 98.2
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 0.0e+00 1305.0 704 98.3
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 0.0e+00 1194.5 710 90.6
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 0.0e+00 1172.9 724 86.9
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 0.0e+00 1149.0 726 85.8
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 0.0e+00 1132.9 723 83.3
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 4.2e-258 894.8 719 69.0
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 1.4e-253 879.8 726 68.0
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 9.8e-247 857.1 724 66.7
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 1.6e-244 849.7 724 66.0
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 1.1e-242 843.6 716 65.2
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 5.6e-242 841.3 730 66.3
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 1.6e-241 839.7 732 66.9
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 6.2e-241 837.8 729 65.4
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 1.1e-240 837.0 718 64.9
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 2.6e-239 832.4 721 63.7
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 7.5e-239 830.9 726 64.0
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 9.8e-239 830.5 728 64.3
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 1.3e-238 830.1 740 64.2
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 3.7e-238 828.6 726 65.4
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 4.9e-238 828.2 723 65.3
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 1.1e-237 827.0 717 63.5
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 4.1e-237 825.1 720 61.8
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 2.3e-235 819.3 718 64.2
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.5e-234 815.8 718 62.4
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 4.3e-234 815.1 728 64.7
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 4.3e-234 815.1 721 61.6
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 9.5e-234 813.9 722 61.6
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 1.4e-232 810.1 714 63.0
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 1.4e-232 810.1 726 61.2
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 1.4e-232 810.1 724 63.3
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 1.8e-232 809.7 720 61.2
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 2.3e-232 809.3 717 63.3
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 6.8e-232 807.7 721 63.0
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 5.8e-231 804.7 719 63.7
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 6.4e-230 801.2 720 60.6
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 2.4e-229 799.3 727 64.6
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 5.4e-229 798.1 727 63.4
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 9.2e-229 797.3 714 63.6
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 7.8e-228 794.3 716 63.4
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 7.8e-228 794.3 726 61.2
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 1.0e-227 793.9 720 63.1
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 3.0e-227 792.3 726 63.8
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 8.6e-227 790.8 725 61.2
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.1e-226 790.4 726 63.8
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.5e-226 790.0 724 61.6
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.5e-226 789.3 718 62.0
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 2.5e-226 789.3 729 62.8
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 3.3e-226 788.9 726 63.9
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 4.3e-226 788.5 726 63.5
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 4.3e-226 788.5 719 61.3
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 7.3e-226 787.7 726 63.8
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 1.2e-225 786.9 714 61.8
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.6e-225 786.6 718 62.0
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 2.8e-225 785.8 727 63.1
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 1.2e-223 780.4 720 62.9
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 1.5e-223 780.0 721 60.9
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 4.4e-223 778.5 720 61.1
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 4.9e-222 775.0 718 61.3
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 8.4e-222 774.2 724 62.6
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.1e-221 773.9 718 61.6
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 2.7e-220 769.2 794 57.1
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 7.8e-220 767.7 730 62.3
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.0e-219 767.3 721 61.4
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 3.0e-219 765.8 704 61.2
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 3.3e-218 762.3 712 61.2
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 5.6e-218 761.5 729 58.4
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 7.3e-218 761.1 721 61.3
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 1.3e-217 760.4 729 58.3
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 6.2e-217 758.1 715 59.9
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 2.4e-216 756.1 746 58.4
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 1.2e-215 753.8 947 49.7
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 3.4e-215 752.3 718 59.5
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 6.0e-212 741.5 729 59.7
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 8.7e-211 737.6 933 49.7
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 5.6e-210 734.9 637 65.1
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 7.4e-210 734.6 731 59.1
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 4.3e-202 708.8 767 55.5
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 9.6e-202 707.6 731 56.0
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 4.8e-201 705.3 723 54.9
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 7.6e-199 698.0 725 56.6
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 4.9e-198 695.3 733 55.5
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 6.5e-198 694.9 709 57.3
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 3.7e-193 679.1 749 55.7
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 9.0e-192 674.5 725 53.9
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 1.5e-191 673.7 721 54.2
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 1.5e-191 673.7 721 54.4
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 4.5e-191 672.2 725 55.7
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 1.0e-190 671.0 722 54.2
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 1.3e-190 670.6 722 54.4
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 6.5e-190 668.3 721 54.5
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 1.4e-189 667.2 721 53.8
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 9.3e-189 664.5 593 62.2
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 9.7e-186 654.4 745 52.1
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 4.2e-181 639.0 620 58.7
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 1.2e-180 637.5 581 62.8
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 6.7e-179 631.7 615 58.7
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 1.2e-175 620.9 549 64.8
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 2.0e-175 620.2 571 60.4
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 2.5e-165 586.6 594 57.9
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 4.8e-161 572.4 716 51.0
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 1.4e-155 554.3 531 58.2
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 5.9e-151 538.9 591 53.3
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 5.9e-135 485.7 525 55.2
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 5.8e-130 469.2 776 40.9
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 3.0e-126 456.8 801 38.5
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 1.3e-110 404.8 719 35.5
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 3.9e-94 350.1 279 66.3
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 1.5e-93 348.2 303 63.7
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 1.0e-86 325.5 462 47.2
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 2.4e-83 314.3 440 46.8
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 1.1e-77 295.4 436 43.6
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 1.8e-62 245.0 307 50.5
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 1.4e-56 225.3 367 42.2
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 1.4e-56 225.3 181 63.0
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 2.6e-53 214.5 147 79.6
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 8.2e-52 209.5 193 57.5
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 4.2e-48 197.2 294 42.9
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 1.1e-43 182.6 159 67.3
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 7.2e-40 169.9 156 55.1
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 3.0e-38 164.5 133 75.9
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 4.4e-37 160.6 133 75.2
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 2.1e-31 141.7 100 72.0
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 8.9e-30 136.3 132 61.4
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 1.3e-28 132.5 107 72.0
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 1.1e-24 119.4 149 48.3
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 2.9e-20 104.8 107 54.2
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 7.0e-11 73.6 141 39.0
Cre01.g029050 Chlamydomonas reinhardtii HOM05D003178 ORTHO05D003636 1.8e-06 58.9 137 32.8
MBI16_g22817_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 6.8e-06 57.0 35 77.1


User provided reference genes

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