Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 7.4e-141 505.0 551 100.0
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 7.7e-106 388.7 551 90.6
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 5.7e-93 345.9 551 61.3
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.3e-92 342.4 232 80.2
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 3.4e-53 213.8 237 50.6
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 7.6e-45 186.0 236 46.6
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 3.8e-44 183.7 236 45.3
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 2.2e-36 157.9 235 43.0
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 1.3e-31 142.1 232 40.5
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 1.6e-31 141.7 231 39.8
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.1e-30 137.5 231 39.8
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 4.0e-30 137.1 230 41.7
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 9.0e-30 136.0 232 39.7
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.2e-29 135.6 232 39.2
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.2e-29 135.6 232 38.8
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 1.5e-29 135.2 234 40.2
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 5.8e-29 133.3 232 37.9
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.7e-28 131.7 232 39.2
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 3.8e-28 130.6 237 37.6
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 3.8e-28 130.6 232 37.5
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.4e-27 128.6 235 38.3
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 9.3e-27 125.9 232 36.6
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 1.0e-25 122.5 225 37.3
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.0e-25 122.5 231 38.1
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.3e-25 121.3 231 33.3
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.5e-24 118.6 228 34.6
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 5.6e-24 116.7 231 34.2
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 9.6e-24 115.9 203 36.9
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 1.3e-23 115.5 231 31.6
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 1.1e-22 112.5 230 36.5
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.4e-22 112.1 233 35.2
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 5.3e-22 110.2 224 35.3
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 6.9e-22 109.8 227 33.5
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 9.0e-22 109.4 224 32.6
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 2.6e-21 107.8 227 34.8
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 5.8e-21 106.7 225 32.0
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 5.8e-21 106.7 207 34.3
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.0e-20 105.9 232 33.2
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.0e-20 105.9 192 35.4
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.3e-20 105.5 244 32.4
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 2.2e-20 104.8 231 31.2
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.9e-20 104.4 237 34.2
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 4.9e-20 103.6 232 31.5
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 6.5e-20 103.2 235 32.3
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 8.4e-20 102.8 235 32.3
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 4.2e-19 100.5 235 31.9
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.2e-18 99.0 232 31.0
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.3e-17 95.5 204 30.9
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 5.1e-17 93.6 231 29.9
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 6.7e-17 93.2 231 32.0
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 3.3e-16 90.9 220 32.3
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.3e-16 90.9 237 32.9
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 4.3e-16 90.5 224 30.4
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.7e-16 90.1 233 29.2
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 7.4e-16 89.7 230 28.7
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 9.7e-16 89.4 233 30.5
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.3e-15 89.0 232 32.3
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.3e-15 89.0 203 29.6
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 1.6e-15 88.6 229 33.2
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 2.2e-15 88.2 203 30.0
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.8e-15 87.8 204 32.4
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.8e-15 87.8 204 32.4
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 3.7e-15 87.4 218 29.4
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.3e-15 86.7 187 30.5
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 8.2e-15 86.3 233 29.2
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 8.2e-15 86.3 224 29.9
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-14 85.9 224 27.7
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 1.4e-14 85.5 231 30.7
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.8e-14 85.1 184 31.0
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 2.4e-14 84.7 188 33.5
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 4.1e-14 84.0 240 28.3
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 6.9e-14 83.2 200 30.5
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.2e-13 82.4 204 33.3
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 1.5e-13 82.0 195 32.8
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.0e-13 81.6 202 31.7
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 5.9e-13 80.1 195 31.3
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 7.7e-13 79.7 183 29.0
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.3e-12 79.0 198 31.8
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.7e-12 78.6 231 27.7
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 2.9e-12 77.8 232 26.7
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 3.8e-12 77.4 201 26.4
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 6.5e-12 76.6 208 29.3
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.4e-11 75.5 208 29.3
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.4e-11 75.5 208 29.3
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.9e-11 75.1 207 30.4
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 2.5e-11 74.7 202 30.2
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 4.2e-11 73.9 208 28.4
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 9.4e-11 72.8 249 28.1
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.1e-10 71.6 225 28.4
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 3.6e-10 70.9 207 28.5
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.6e-10 70.9 94 43.6
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.0e-09 69.3 200 29.0
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 1.4e-09 68.9 228 31.6
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 3.9e-09 67.4 202 30.2
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 3.9e-09 67.4 231 26.4
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 6.7e-09 66.6 220 27.3
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 8.8e-09 66.2 243 27.2
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 8.8e-09 66.2 170 29.4
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.1e-08 65.9 215 27.4
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.1e-08 65.9 208 27.4
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.5e-08 65.5 204 27.9
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.0e-08 65.1 81 40.7
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 2.5e-08 64.7 200 27.0
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 3.3e-08 64.3 215 24.7
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 3.3e-08 64.3 223 26.9
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 4.3e-08 63.9 185 31.4
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 4.3e-08 63.9 55 56.4
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.3e-08 63.9 164 27.4
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 5.7e-08 63.5 233 28.3
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 5.7e-08 63.5 124 36.3
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 1.3e-07 62.4 82 46.3
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.7e-07 62.0 186 29.0
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 1.7e-07 62.0 225 25.8
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 2.8e-07 61.2 232 27.2
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.8e-07 61.2 229 27.1
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 3.7e-07 60.8 182 29.7
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 3.7e-07 60.8 205 25.9
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 3.7e-07 60.8 230 27.0
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 4.8e-07 60.5 184 26.1
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 4.8e-07 60.5 185 28.6
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 4.8e-07 60.5 162 28.4
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 8.2e-07 59.7 223 25.6
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.4e-06 58.9 182 28.6
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 2.4e-06 58.2 232 26.7
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 4.1e-06 57.4 222 24.3
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 5.3e-06 57.0 182 27.5
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 6.9e-06 56.6 80 36.2


User provided reference genes

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