Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 7.8e-177 623.6 301 100.0
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 2.7e-169 598.6 300 95.7
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 6.0e-169 597.4 300 95.7
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 4.9e-155 551.2 301 89.4
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 3.2e-154 548.5 301 87.0
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.5e-148 529.6 306 85.0
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 1.3e-126 456.8 289 73.0
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 3.7e-126 455.3 289 73.0
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 2.0e-124 449.5 288 75.3
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 1.7e-123 446.4 295 72.9
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.7e-123 446.4 283 74.6
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.2e-123 446.0 295 72.9
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 6.5e-123 444.5 298 70.5
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 1.1e-122 443.7 287 72.5
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 2.7e-121 439.1 287 72.1
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 2.3e-120 436.0 283 74.6
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 3.9e-120 435.3 283 73.9
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 8.7e-120 434.1 283 73.1
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 2.5e-119 432.6 297 72.7
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 4.3e-119 431.8 287 74.2
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 7.4e-119 431.0 283 72.8
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 7.4e-119 431.0 294 70.1
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 9.7e-119 430.6 283 71.0
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 3.7e-118 428.7 283 72.1
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 4.8e-118 428.3 283 70.3
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 4.8e-118 428.3 288 69.4
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 6.3e-118 427.9 308 67.9
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 8.2e-118 427.6 296 72.3
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 8.2e-118 427.6 295 69.8
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 1.1e-117 427.2 283 72.8
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 1.8e-117 426.4 289 69.6
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 3.1e-117 425.6 283 72.8
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 3.1e-117 425.6 283 70.0
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 4.1e-117 425.2 283 73.5
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 9.0e-117 424.1 283 70.7
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 1.2e-116 423.7 283 71.7
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 4.5e-116 421.8 283 71.4
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 4.5e-116 421.8 297 70.7
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 1.0e-115 420.6 282 73.8
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 1.3e-115 420.2 283 70.0
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 1.7e-115 419.9 295 68.5
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 2.2e-115 419.5 285 68.8
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 3.8e-115 418.7 300 72.0
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 5.0e-115 418.3 283 69.6
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 6.5e-115 417.9 282 72.0
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 6.5e-115 417.9 283 75.3
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 2.5e-114 416.0 283 69.3
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 2.5e-114 416.0 300 67.0
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 7.2e-114 414.5 298 67.8
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 2.7e-113 412.5 289 68.2
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 3.6e-113 412.1 296 67.9
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 6.1e-113 411.4 282 69.5
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 7.9e-113 411.0 294 65.6
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 7.9e-113 411.0 294 68.7
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 2.3e-112 409.5 296 66.2
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 3.0e-112 409.1 289 66.4
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 3.9e-112 408.7 295 65.4
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 8.8e-112 407.5 287 69.0
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 1.5e-111 406.8 287 69.0
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 4.3e-111 405.2 320 64.4
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 5.7e-111 404.8 284 67.6
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 2.2e-110 402.9 289 67.1
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 2.8e-110 402.5 319 62.4
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 5.3e-109 398.3 284 65.1
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 5.9e-108 394.8 340 59.4
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 1.3e-107 393.7 283 67.5
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 3.8e-107 392.1 287 63.4
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 2.5e-106 389.4 288 61.8
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 3.2e-106 389.0 287 63.4
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 2.7e-105 386.0 289 61.6
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 3.6e-105 385.6 256 72.7
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 4.7e-105 385.2 295 65.4
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 6.1e-105 384.8 281 68.0
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 6.1e-105 384.8 289 63.0
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 7.9e-105 384.4 284 63.7
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 1.0e-104 384.0 287 63.1
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 3.0e-104 382.5 286 63.3
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 6.7e-104 381.3 286 63.3
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 2.0e-103 379.8 286 62.2
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 7.4e-103 377.9 286 62.6
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 7.4e-103 377.9 286 62.6
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 1.3e-102 377.1 283 66.4
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 9.1e-101 370.9 286 61.5
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 4.5e-100 368.6 283 66.4
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.3e-99 367.1 301 64.1
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 1.3e-99 367.1 286 59.8
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 3.8e-99 365.5 294 62.9
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 2.5e-98 362.8 289 59.2
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 7.4e-95 351.3 358 50.6
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 1.3e-94 350.5 224 75.0
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 4.1e-93 345.5 286 59.8
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 3.5e-92 342.4 224 74.6
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 1.0e-91 340.9 284 58.5
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 9.4e-90 334.3 283 58.0
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 4.1e-85 318.9 281 53.7
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 9.1e-85 317.8 295 53.9
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 1.2e-84 317.4 281 54.8
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 1.3e-83 313.9 285 53.0
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 2.5e-82 309.7 282 53.5
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 7.2e-82 308.1 218 67.9
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 2.0e-79 300.1 257 58.8
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 4.8e-78 295.4 440 42.7
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 5.6e-66 255.4 286 47.6
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 2.1e-65 253.4 177 67.2
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 8.3e-62 241.5 338 39.6
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 3.9e-59 232.6 186 59.7
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 5.8e-55 218.8 201 55.2
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 3.2e-53 213.0 159 62.3
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 1.3e-51 207.6 173 57.2
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 2.1e-49 200.3 208 54.8
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.6e-44 182.6 143 67.1
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 8.7e-35 151.8 118 59.3
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 3.6e-33 146.4 117 60.7
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 3.9e-27 126.3 293 28.7
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 6.6e-27 125.6 397 24.2
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 3.2e-21 106.7 103 57.3
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 1.3e-17 94.7 70 60.0
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 1.1e-16 91.7 60 73.3
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.3e-14 84.7 53 81.1
CARHR154620 Cardamine hirsuta HOM05D006681 ORTHO05D008338 6.5e-06 55.8 44 59.1


User provided reference genes

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