Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.2e-125 451.8 235 100.0
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.3e-123 446.4 235 98.7
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 4.0e-120 434.9 235 97.0
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.6e-108 396.4 240 86.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 2.2e-102 375.9 236 84.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.3e-94 350.1 241 76.3
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.2e-94 349.4 241 75.9
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.4e-94 347.8 240 75.0
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.2e-93 345.5 240 74.6
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 4.2e-93 345.1 241 75.5
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.1e-92 342.8 238 76.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.5e-90 335.9 237 74.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.6e-89 333.2 222 79.3
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 4.6e-76 288.5 244 65.2
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 6.0e-76 288.1 239 66.5
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 7.9e-76 287.7 239 64.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 3.9e-75 285.4 242 64.0
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 5.1e-75 285.0 240 67.1
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 9.6e-74 280.8 242 62.8
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-73 280.4 242 63.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.7e-73 278.9 244 62.7
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.4e-72 276.9 244 63.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.8e-72 276.6 258 61.6
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.4e-72 276.2 245 60.8
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 3.1e-72 275.8 257 60.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 9.0e-72 274.2 244 62.3
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.2e-71 273.9 175 77.1
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.5e-71 273.5 247 60.3
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.0e-71 273.1 241 61.0
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 5.9e-71 271.6 240 62.5
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.9e-71 271.6 244 61.9
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-70 270.8 237 63.3
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.9e-70 269.2 229 63.3
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 5.0e-70 268.5 237 62.9
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 5.0e-70 268.5 237 62.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 5.0e-70 268.5 241 61.0
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 5.0e-70 268.5 242 58.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.5e-70 268.1 245 59.6
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 8.4e-70 267.7 234 63.2
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 8.4e-70 267.7 249 57.8
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.4e-69 266.9 181 74.0
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.9e-69 266.5 247 59.9
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 4.2e-69 265.4 186 71.0
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 5.5e-69 265.0 230 63.0
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 5.5e-69 265.0 241 61.4
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 7.2e-69 264.6 239 61.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 7.2e-69 264.6 241 60.2
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 7.2e-69 264.6 245 59.6
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 7.2e-69 264.6 235 60.4
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 9.3e-69 264.2 238 61.3
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 9.3e-69 264.2 238 61.3
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 9.3e-69 264.2 241 58.1
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.2e-68 263.8 239 61.1
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.2e-68 263.8 238 61.3
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.2e-68 263.8 240 60.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.1e-68 263.1 242 59.9
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 2.7e-68 262.7 249 60.6
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 6.1e-68 261.5 249 56.6
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 7.9e-68 261.2 239 61.1
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.3e-67 260.4 232 58.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.8e-67 260.0 176 73.9
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.8e-67 260.0 186 69.4
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.3e-67 259.6 249 59.4
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.3e-67 259.6 241 58.1
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 2.3e-67 259.6 235 57.0
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 3.0e-67 259.2 238 60.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.9e-67 258.8 239 60.7
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.9e-67 258.8 239 60.7
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 3.9e-67 258.8 244 56.6
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 5.1e-67 258.5 241 58.9
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 6.7e-67 258.1 239 60.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 6.7e-67 258.1 239 60.3
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.7e-67 258.1 185 69.2
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 6.7e-67 258.1 249 56.2
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 6.7e-67 258.1 237 57.4
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 6.7e-67 258.1 230 59.6
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.1e-66 257.3 176 72.7
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-66 256.9 176 72.7
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.9e-66 256.5 243 57.2
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.9e-66 256.5 243 57.2
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 2.5e-66 256.1 176 72.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.5e-66 256.1 235 60.0
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 3.3e-66 255.8 236 57.6
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 4.3e-66 255.4 237 56.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.7e-66 255.0 250 56.8
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.7e-66 255.0 250 56.8
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.2e-65 253.1 240 56.7
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-65 252.7 177 70.6
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.8e-65 251.9 242 58.7
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 4.8e-65 251.9 238 58.0
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.4e-64 250.4 230 57.8
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 2.4e-64 249.6 246 54.9
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 5.3e-64 248.4 240 56.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 9.0e-64 247.7 233 58.4
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.5e-63 246.9 239 56.1
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.5e-63 246.9 184 67.4
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.6e-63 246.1 245 55.9
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.5e-63 245.4 251 55.0
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 5.9e-63 245.0 239 55.2
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.0e-62 244.2 179 65.4
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.3e-62 243.8 246 55.3
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.2e-62 243.0 247 55.5
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.8e-62 242.3 237 54.4
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 3.8e-62 242.3 250 53.6
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 3.8e-62 242.3 242 54.5
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 6.5e-62 241.5 234 53.4
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 8.5e-62 241.1 163 73.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.1e-61 240.7 230 59.1
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.4e-61 240.4 245 56.7
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.9e-61 240.0 244 54.1
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 3.2e-61 239.2 176 67.6
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.2e-61 239.2 233 54.1
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 5.5e-61 238.4 242 55.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 4.6e-60 235.3 250 53.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 6.1e-60 235.0 232 56.0
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 6.1e-60 235.0 194 61.3
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.0e-59 234.2 242 55.0
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.8e-59 233.4 229 56.3
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.8e-59 233.4 243 51.9
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 3.9e-59 232.3 260 48.5
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.1e-59 231.9 260 48.8
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.3e-58 228.8 176 63.6
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.7e-58 228.4 151 74.2
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 7.4e-58 228.0 218 59.2
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.1e-56 222.6 162 67.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.4e-55 219.2 165 63.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.5e-54 214.9 215 52.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-53 214.2 147 70.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.4e-53 213.8 172 61.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.2e-53 212.2 184 56.5
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 5.5e-53 211.8 172 60.5
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.2e-52 210.7 227 52.0
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.7e-52 208.8 232 52.6
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.4e-51 207.2 198 52.5
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.8e-49 199.5 172 57.6
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 3.7e-49 199.1 173 59.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.8e-49 198.7 164 64.0
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.4e-48 197.2 163 63.8
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 7.2e-45 184.9 228 49.6
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.0e-43 181.0 160 55.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.7e-43 178.3 132 62.9
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-38 164.1 147 59.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.8e-35 153.7 112 66.1
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 4.8e-33 145.6 150 53.3
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.4e-32 143.3 106 64.2
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 5.4e-32 142.1 210 39.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 3.2e-29 132.9 179 39.7
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.4e-27 127.5 161 42.2
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.7e-25 120.6 231 35.5
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.1e-24 117.9 169 37.3
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-19 99.0 76 61.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.9e-17 93.2 163 35.0
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 2.0e-15 87.0 86 50.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.7e-15 86.7 85 50.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 5.0e-14 82.4 106 47.2
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.9e-09 66.6 57 59.6
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 4.9e-09 65.9 57 59.6
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 5.4e-08 62.4 65 46.2


User provided reference genes

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