Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 5.9e-261 903.7 458 100.0
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 6.8e-241 837.0 465 91.8
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 2.2e-207 725.7 462 80.1
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 5.6e-203 711.1 453 79.9
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.3e-196 689.9 460 77.8
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 2.1e-186 656.0 458 76.4
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.5e-131 473.8 487 54.2
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 4.4e-131 472.2 507 53.3
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 6.4e-130 468.4 473 56.0
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 1.1e-129 467.6 481 55.1
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 2.0e-123 446.8 483 53.8
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 2.6e-123 446.4 471 54.4
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 5.8e-123 445.3 479 52.4
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 9.2e-121 438.0 464 53.2
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 9.2e-121 438.0 477 52.8
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 2.7e-120 436.4 469 53.7
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.0e-119 434.5 465 53.5
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 3.0e-119 433.0 485 51.1
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 3.0e-119 433.0 470 51.1
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 6.6e-119 431.8 476 52.7
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 8.6e-119 431.4 477 52.4
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 8.6e-119 431.4 469 52.0
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.1e-118 431.0 476 52.5
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.8e-116 423.7 515 47.6
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 3.1e-116 422.9 468 49.8
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 8.9e-116 421.4 413 55.9
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 2.0e-115 420.2 475 50.7
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 5.8e-115 418.7 466 50.6
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.3e-114 417.5 473 50.3
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.3e-114 417.5 498 50.2
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 1.7e-114 417.2 459 51.2
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 6.4e-114 415.2 470 51.7
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.4e-113 414.1 509 47.2
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 4.1e-113 412.5 515 47.8
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 5.4e-113 412.1 514 47.5
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 5.4e-113 412.1 503 47.3
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 7.1e-113 411.8 503 47.3
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.2e-112 411.0 495 50.3
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.1e-112 410.2 459 51.9
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 2.7e-112 409.8 460 50.7
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.5e-112 409.5 460 52.0
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 3.5e-112 409.5 509 46.8
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 4.6e-112 409.1 456 49.8
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 4.6e-112 409.1 483 48.7
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 7.8e-112 408.3 498 49.0
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 3.0e-111 406.4 518 45.9
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 8.6e-111 404.8 479 49.5
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-110 404.4 460 51.3
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.5e-110 404.1 460 51.5
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 1.5e-110 404.1 467 49.0
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 2.5e-110 403.3 461 51.2
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 4.3e-110 402.5 475 47.6
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 9.5e-110 401.4 469 49.5
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 6.8e-108 395.2 476 48.3
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 8.9e-108 394.8 466 48.5
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 1.2e-107 394.4 476 48.5
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 2.0e-107 393.7 469 48.0
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 2.0e-107 393.7 508 44.5
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 3.4e-107 392.9 472 48.1
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 4.4e-107 392.5 508 46.7
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 1.7e-106 390.6 544 44.9
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 1.0e-103 381.3 478 46.7
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 6.6e-103 378.6 463 46.4
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 2.5e-102 376.7 497 45.1
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 5.6e-102 375.6 474 47.9
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 3.6e-101 372.9 459 48.8
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.1e-100 371.3 417 48.7
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 6.9e-100 368.6 462 47.6
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 1.2e-99 367.9 487 43.3
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 1.5e-99 367.5 462 48.5
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 5.8e-99 365.5 458 48.3
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 1.7e-98 364.0 484 43.4
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.4e-97 360.9 457 46.6
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 1.9e-97 360.5 457 46.0
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 2.4e-97 360.1 458 48.9
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 2.4e-97 360.1 452 47.6
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 4.2e-97 359.4 459 46.8
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 5.4e-97 359.0 224 80.4
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 7.1e-97 358.6 466 47.6
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 1.2e-96 357.8 464 47.2
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 1.6e-96 357.5 463 48.6
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 3.5e-96 356.3 457 46.2
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 7.8e-96 355.1 461 45.8
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 3.3e-94 349.7 430 46.3
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 9.3e-89 331.6 450 42.2
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 9.3e-89 331.6 452 44.7
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 2.1e-88 330.5 460 43.7
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 9.3e-81 305.1 401 48.9
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.2e-80 304.7 377 48.8
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.5e-78 297.7 343 48.7
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 2.5e-78 297.0 390 46.7
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 2.2e-74 283.9 452 38.5
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 7.1e-73 278.9 408 42.9
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 5.9e-67 259.2 205 62.4
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 6.5e-66 255.8 352 46.3
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 9.4e-65 251.9 462 36.8
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 5.7e-62 242.7 199 60.8
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 6.3e-61 239.2 325 44.0
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 1.8e-60 237.7 226 54.0
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.1e-60 236.9 516 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 4.2e-57 226.5 548 32.1
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 1.8e-47 194.5 408 30.9
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 3.9e-47 193.4 123 75.6
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 1.1e-44 185.3 243 45.3
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.4e-44 184.9 291 40.5
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.0e-42 178.7 123 70.7
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.7e-42 177.9 274 40.1
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 3.8e-42 176.8 481 28.7
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.5e-38 164.9 207 46.9
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 5.3e-36 156.4 189 42.3
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 3.5e-27 127.1 91 67.0
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 1.9e-25 121.3 73 76.7
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 5.2e-23 113.2 90 57.8
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 5.0e-18 96.7 113 44.2
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.2e-14 85.5 124 41.1
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.5e-14 85.1 48 81.2
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 2.9e-13 80.9 155 36.1
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 8.3e-13 79.3 55 69.1
CAN.G473.140 Capsicum annuum HOM05D006388 ORTHO05D008026 3.2e-12 77.4 144 41.0
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 4.6e-11 73.6 51 66.7
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 1.6e-08 65.1 61 57.4
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 4.7e-08 63.5 87 46.0
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 2.6e-06 57.8 171 28.7


User provided reference genes

Program Settings