Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015267 Solanum tuberosum HOM05D010028 ORTHO05D012080 1.9e-127 459.1 222 100.0
Sopen03g029930 Solanum pennellii HOM05D010028 ORTHO05D012080 2.4e-114 415.6 222 91.0
Solyc03g019690.1 Solanum lycopersicum HOM05D010028 ORTHO05D012080 3.4e-113 411.8 222 89.6
CAN.G1611.13 Capsicum annuum HOM05D010028 ORTHO05D012080 5.9e-89 331.3 219 78.5
CAN.G1611.12 Capsicum annuum HOM05D010028 ORTHO05D012080 1.0e-88 330.5 218 78.0
PGSC0003DMG400010128 Solanum tuberosum HOM05D010028 ORTHO05D012080 9.8e-68 260.8 220 63.2
PGSC0003DMG400009511 Solanum tuberosum HOM05D010028 ORTHO05D012080 2.5e-63 246.1 223 61.4
Solyc03g098790.3 Solanum lycopersicum HOM05D010028 ORTHO05D012080 9.5e-63 244.2 227 59.5
PGSC0003DMG400009513 Solanum tuberosum HOM05D010028 ORTHO05D012080 2.6e-60 236.1 222 59.0
Solyc03g098780.2 Solanum lycopersicum HOM05D010028 ORTHO05D012080 7.0e-58 228.0 225 56.9
PGSC0003DMG400009512 Solanum tuberosum HOM05D010028 ORTHO05D012080 7.0e-58 228.0 175 67.4
CAN.G861.43 Capsicum annuum HOM05D010028 ORTHO05D012080 1.3e-56 223.8 235 55.3
Sopen03g029520 Solanum pennellii HOM05D010028 ORTHO05D012080 2.3e-56 223.0 224 58.0
Peaxi162Scf00171g00131 Petunia axillaris HOM05D000535 ORTHO05D000427 2.9e-51 206.1 232 54.3
CAN.G929.3 Capsicum annuum HOM05D010028 ORTHO05D012080 4.1e-50 202.2 234 50.4
PGSC0003DMG400009514 Solanum tuberosum HOM05D010028 ORTHO05D012080 2.3e-45 186.4 209 50.7
CAN.G939.22 Capsicum annuum HOM05D010028 ORTHO05D012080 3.5e-41 172.6 232 46.6
Solyc03g098760.3 Solanum lycopersicum HOM05D010028 ORTHO05D012080 1.4e-37 160.6 183 51.9
Nitab4.5_0016396g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.6e-36 156.4 233 43.8
CAN.G883.1 Capsicum annuum HOM05D010028 ORTHO05D012080 5.6e-31 138.7 229 38.4
Sopen03g029470 Solanum pennellii HOM05D010028 ORTHO05D012080 4.0e-29 132.5 161 49.1
Sopen03g029500 Solanum pennellii HOM05D010028 ORTHO05D012080 3.5e-25 119.4 110 56.4
CAN.G149.1 Capsicum annuum HOM05D010028 ORTHO05D012080 1.7e-24 117.1 159 42.1
PGSC0003DMG400010141 Solanum tuberosum HOM05D000535 ORTHO05D014685 5.6e-23 112.1 229 38.4
Sopen03g029490 Solanum pennellii HOM05D010028 ORTHO05D012080 5.2e-21 105.5 96 63.5
Atru.chr6.1198 Acer truncatum HOM05D000535 ORTHO05D000427 2.6e-20 103.2 210 34.3
Atru.chr6.1195 Acer truncatum HOM05D000535 ORTHO05D000427 2.2e-19 100.1 210 33.8
PGSC0003DMG400010129 Solanum tuberosum HOM05D010028 ORTHO05D012080 6.4e-19 98.6 168 42.9
Solyc03g098710.1 Solanum lycopersicum HOM05D000535 ORTHO05D014685 1.4e-18 97.4 230 36.5
Eucgr.L03158 Eucalyptus grandis HOM05D000535 ORTHO05D000427 4.2e-18 95.9 222 36.0
Eucgr.K02326 Eucalyptus grandis HOM05D000535 ORTHO05D000427 5.4e-18 95.5 222 36.0
Gohir.D10G224000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 5.4e-18 95.5 218 36.7
COL.COLO4_29947 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.6e-17 94.0 213 33.8
COL.COLO4_16151 Corchorus olitorius HOM05D000535 ORTHO05D000427 2.1e-17 93.6 198 35.9
Eucgr.L01961 Eucalyptus grandis HOM05D000535 ORTHO05D000427 2.1e-17 93.6 222 35.6
Duzib268G0985 Durio zibethinus HOM05D000535 ORTHO05D000427 1.0e-16 91.3 183 36.1
Sopen03g029420 Solanum pennellii HOM05D000535 ORTHO05D014685 1.3e-16 90.9 236 34.7
PGSC0003DMG400010136 Solanum tuberosum HOM05D000535 ORTHO05D014685 1.3e-16 90.9 230 34.3
Gorai.011G254400 Gossypium raimondii HOM05D000535 ORTHO05D000427 2.3e-16 90.1 187 38.5
Gohir.D10G223500 Gossypium hirsutum HOM05D000535 ORTHO05D000427 3.0e-16 89.7 187 38.5
Gohir.D10G223900 Gossypium hirsutum HOM05D000535 ORTHO05D000427 3.0e-16 89.7 219 34.2
Gorai.011G254900 Gossypium raimondii HOM05D000535 ORTHO05D000427 3.9e-16 89.4 218 34.9
MSTRG.11561 Avicennia marina HOM05D000535 ORTHO05D000427 5.1e-16 89.0 223 32.3
Gohir.D10G223800 Gossypium hirsutum HOM05D000535 ORTHO05D000427 5.1e-16 89.0 220 34.1
CAN.G65.71 Capsicum annuum HOM05D000535 ORTHO05D000427 1.1e-15 87.8 229 35.4
Gohir.A10G215064 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.1e-15 87.8 218 33.9
Dinv04609 Davidia involucrata HOM05D000535 ORTHO05D000427 1.5e-15 87.4 226 32.3
Ciclev10022124m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.9e-15 87.0 182 34.1
Duzib268G1738 Durio zibethinus HOM05D000535 ORTHO05D000427 3.3e-15 86.3 183 35.0
COL.COLO4_16148 Corchorus olitorius HOM05D000535 ORTHO05D000427 4.3e-15 85.9 189 34.4
Medtr0084s0030 Medicago truncatula HOM05D000535 ORTHO05D000427 4.3e-15 85.9 176 32.4
Ciclev10023257m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.6e-15 85.5 228 36.4
DCAR_011413 Daucus carota HOM05D000535 ORTHO05D000427 5.6e-15 85.5 201 35.3
Thecc.03G051300 Theobroma cacao HOM05D000535 ORTHO05D000427 5.6e-15 85.5 205 33.7
Gohir.D09G052700 Gossypium hirsutum HOM05D000535 ORTHO05D000427 9.6e-15 84.7 225 32.9
Gohir.D10G223700 Gossypium hirsutum HOM05D000535 ORTHO05D000427 9.6e-15 84.7 224 36.6
PGSC0003DMG400010144 Solanum tuberosum HOM05D000535 ORTHO05D014685 9.6e-15 84.7 195 35.4
Ciclev10002395m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.3e-14 84.3 186 32.3
Ciclev10022129m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.3e-14 84.3 182 33.5
Gohir.A09G051800 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.3e-14 84.3 220 33.6
Gohir.A10G214900 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.3e-14 84.3 186 35.5
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 1.6e-14 84.0 223 34.5
Gohir.A10G215032 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.6e-14 84.0 184 38.0
vmacro18605 Vaccinium macrocarpon HOM05D000535 ORTHO05D000427 1.6e-14 84.0 227 33.9
Ciclev10021858m.g Citrus clementina HOM05D000535 ORTHO05D000427 2.1e-14 83.6 227 34.8
HanXRQChr14g0444671 Helianthus annuus HOM05D000535 ORTHO05D000427 2.1e-14 83.6 220 32.3
Ciclev10024002m.g Citrus clementina HOM05D000535 ORTHO05D000427 2.8e-14 83.2 180 33.9
Ciclev10023572m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.6e-14 82.8 228 35.5
Duzib205G0258 Durio zibethinus HOM05D000535 ORTHO05D000427 3.6e-14 82.8 184 34.8
PGSC0003DMG400027053 Solanum tuberosum HOM05D000535 ORTHO05D000427 4.8e-14 82.4 220 34.5
Ciclev10023371m.g Citrus clementina HOM05D000535 ORTHO05D000427 6.2e-14 82.0 228 36.4
Gohir.A10G215000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 6.2e-14 82.0 219 33.3
vmacro18604 Vaccinium macrocarpon HOM05D000535 ORTHO05D000427 6.2e-14 82.0 225 35.1
Ciclev10022211m.g Citrus clementina HOM05D000535 ORTHO05D000427 8.1e-14 81.6 185 34.1
COL.COLO4_16157 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.1e-13 81.3 208 29.3
ECA238G1670 Erigeron canadensis HOM05D000535 ORTHO05D000427 1.4e-13 80.9 198 30.8
AUR62028777 Chenopodium quinoa HOM05D000535 ORTHO05D000427 1.8e-13 80.5 200 33.5
Sc14g0008190 Simmondsia chinensis HOM05D000535 ORTHO05D000427 2.4e-13 80.1 219 35.6
Ciclev10022284m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.1e-13 79.7 233 35.2
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 3.1e-13 79.7 189 32.3
Ciclev10023465m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.0e-13 79.3 224 33.5
Hma1.2p1_0989F.1_g244870 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.0e-13 79.3 203 33.0
Medtr0302s0030 Medicago truncatula HOM05D000535 ORTHO05D000427 4.0e-13 79.3 180 30.0
PGSC0003DMG400010146 Solanum tuberosum HOM05D013910 ORTHO05D014685 4.0e-13 79.3 219 34.2
Thecc.03G051800 Theobroma cacao HOM05D000535 ORTHO05D000427 4.0e-13 79.3 219 32.9
Gohir.D10G223600 Gossypium hirsutum HOM05D000535 ORTHO05D000427 6.9e-13 78.6 186 34.9
PGSC0003DMG400010139 Solanum tuberosum HOM05D013910 ORTHO05D014685 6.9e-13 78.6 222 33.8
CAN.G144.18 Capsicum annuum HOM05D010028 ORTHO05D012080 9.0e-13 78.2 75 50.7
Gohir.D10G223650 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.2e-12 77.8 221 34.4
Gorai.011G254500 Gossypium raimondii HOM05D000535 ORTHO05D000427 1.2e-12 77.8 221 34.4
Psat4g160080 Pisum sativum HOM05D000535 ORTHO05D000427 1.5e-12 77.4 180 32.2
PGSC0003DMG400010143 Solanum tuberosum HOM05D013910 ORTHO05D014685 1.5e-12 77.4 222 33.8
Medtr0100s0150 Medicago truncatula HOM05D000535 ORTHO05D000427 2.0e-12 77.0 182 30.2
MSTRG.11530 Avicennia marina HOM05D000535 ORTHO05D000427 3.4e-12 76.3 225 30.7
Psat4g138880 Pisum sativum HOM05D000535 ORTHO05D000427 4.5e-12 75.9 181 31.5
Psat4g138920 Pisum sativum HOM05D000535 ORTHO05D000427 4.5e-12 75.9 181 31.5
Medtr0211s0080 Medicago truncatula HOM05D000535 ORTHO05D000427 5.8e-12 75.5 174 29.9
TPR.G16475 Trifolium pratense HOM05D000535 ORTHO05D000427 5.8e-12 75.5 181 30.9
ECA238G4632 Erigeron canadensis HOM05D000535 ORTHO05D000427 7.6e-12 75.1 220 31.4
Gorai.011G254600 Gossypium raimondii HOM05D000535 ORTHO05D000427 7.6e-12 75.1 186 34.9
Ciclev10023581m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.3e-11 74.3 134 41.8
Hma1.2p1_0060F.1_g032810 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.3e-11 74.3 196 32.7
Oeu020486.1 Olea europaea HOM05D000535 ORTHO05D000427 2.2e-11 73.6 224 30.8
Medtr3g014870 Medicago truncatula HOM05D000535 ORTHO05D000427 2.9e-11 73.2 183 30.1
TPR.G28351 Trifolium pratense HOM05D000535 ORTHO05D000427 2.9e-11 73.2 181 29.8
PGSC0003DMG400010137 Solanum tuberosum HOM05D013910 ORTHO05D014685 4.9e-11 72.4 222 33.8
Medtr7g108815 Medicago truncatula HOM05D000535 ORTHO05D000427 6.4e-11 72.0 195 32.3
Glyma.09G163200 Glycine max HOM05D000535 ORTHO05D000427 8.4e-11 71.6 209 32.5
Actinidia26771 Actinidia chinensis HOM05D000535 ORTHO05D000427 1.1e-10 71.2 194 32.0
Hma1.2p1_0807F.1_g221410 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.1e-10 71.2 207 30.0
Medtr3g014820 Medicago truncatula HOM05D000535 ORTHO05D000427 1.1e-10 71.2 183 29.5
SGA_v2.0_scaffold14G07094 Striga asiatica HOM05D000535 ORTHO05D000427 1.1e-10 71.2 233 31.8
Haze_08461 Corylus avellana HOM05D000535 ORTHO05D000427 1.4e-10 70.9 183 33.3
Medtr2g073010 Medicago truncatula HOM05D000535 ORTHO05D000427 1.4e-10 70.9 204 31.9
Sc14g0008200 Simmondsia chinensis HOM05D000535 ORTHO05D000427 1.4e-10 70.9 191 37.2
TPR.G35003 Trifolium pratense HOM05D000535 ORTHO05D000427 2.4e-10 70.1 190 31.6
CAN.G929.11 Capsicum annuum HOM05D000535 ORTHO05D000427 3.2e-10 69.7 189 31.7
Eucgr.K02323 Eucalyptus grandis HOM05D000535 ORTHO05D000427 3.2e-10 69.7 220 30.0
Lj2g0003621 Lotus japonicus HOM05D000535 ORTHO05D000427 3.2e-10 69.7 195 27.7
Nn4g25150 Nelumbo nucifera HOM05D000535 ORTHO05D000427 3.2e-10 69.7 217 31.3
Sopen03g029410 Solanum pennellii HOM05D013910 ORTHO05D014685 3.2e-10 69.7 219 30.1
CAN.G929.9 Capsicum annuum HOM05D000535 ORTHO05D000427 4.2e-10 69.3 217 31.8
Ca_03923_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 4.2e-10 69.3 205 29.8
Phvul.011G166500 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 4.2e-10 69.3 177 31.6
TPR.G6098 Trifolium pratense HOM05D000535 ORTHO05D000427 4.2e-10 69.3 186 30.1
Cfa019505 Carpinus fangiana HOM05D000535 ORTHO05D000427 7.1e-10 68.6 150 34.0
Ca_24100_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 7.1e-10 68.6 181 29.8
Nn4g23055 Nelumbo nucifera HOM05D000535 ORTHO05D000427 7.1e-10 68.6 203 31.0
TPR.G6065 Trifolium pratense HOM05D000535 ORTHO05D000427 7.1e-10 68.6 183 30.6
AUR62028778 Chenopodium quinoa HOM05D000535 ORTHO05D000427 9.3e-10 68.2 189 31.2
Nn5g28809 Nelumbo nucifera HOM05D000535 ORTHO05D000427 9.3e-10 68.2 250 31.6
VMungo1127G0967 Vigna mungo HOM05D000535 ORTHO05D000427 9.3e-10 68.2 172 30.8
AUR62005780 Chenopodium quinoa HOM05D000535 ORTHO05D000427 1.2e-09 67.8 231 29.4
Ca_09174_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 1.2e-09 67.8 180 29.4
Glyma.08G235400 Glycine max HOM05D000535 ORTHO05D000427 1.2e-09 67.8 189 30.2
Phvul.011G169900 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 1.2e-09 67.8 177 31.6
TPR.G17980 Trifolium pratense HOM05D000535 ORTHO05D000427 1.2e-09 67.8 180 29.4
Lalb_Chr03g0031361 Lupinus albus HOM05D000535 ORTHO05D000427 1.6e-09 67.4 176 31.2
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.1e-09 67.0 191 30.4
Ca_26715_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 2.7e-09 66.6 184 29.3
Dinv12307 Davidia involucrata HOM05D000535 ORTHO05D000006 2.7e-09 66.6 184 32.6
Glyma.09G163600 Glycine max HOM05D000535 ORTHO05D000427 2.7e-09 66.6 223 31.4
Nn3g18575 Nelumbo nucifera HOM05D000535 ORTHO05D000427 2.7e-09 66.6 254 30.7
Psat1g007640 Pisum sativum HOM05D000535 ORTHO05D000427 2.7e-09 66.6 209 31.6
arahy.Tifrunner.gnm1.ann1.1T55P5 Arachis hypogaea HOM05D000535 ORTHO05D000427 3.5e-09 66.2 217 28.6
Ca_26713_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 4.6e-09 65.9 184 29.3
Ca_26714_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 4.6e-09 65.9 184 29.3
Nn3g18118 Nelumbo nucifera HOM05D000535 ORTHO05D000427 4.6e-09 65.9 203 30.5
Glyma.09G163300 Glycine max HOM05D000535 ORTHO05D000427 6.0e-09 65.5 226 29.2
Glyma.15G211500 Glycine max HOM05D000535 ORTHO05D000427 6.0e-09 65.5 188 31.9
MSTRG.11531 Avicennia marina HOM05D000535 ORTHO05D000427 7.9e-09 65.1 167 32.3
Cfa019506 Carpinus fangiana HOM05D000535 ORTHO05D000427 1.0e-08 64.7 114 35.1
Ciclev10023557m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.0e-08 64.7 135 34.1
Glyma.08G235300 Glycine max HOM05D000535 ORTHO05D000427 1.0e-08 64.7 178 28.7
Glyma.08G341500 Glycine max HOM05D010343 ORTHO05D011300 1.0e-08 64.7 220 30.0
Medtr8g059790 Medicago truncatula HOM05D000535 ORTHO05D000427 1.0e-08 64.7 180 29.4
Nn4g23054 Nelumbo nucifera HOM05D000535 ORTHO05D000427 1.0e-08 64.7 205 30.7
SGA_v2.0_scaffold14G07097 Striga asiatica HOM05D000535 ORTHO05D000427 1.8e-08 63.9 200 31.0
Ca_09173_v3 Cicer arietinum L. HOM05D000535 ORTHO05D000427 2.3e-08 63.5 184 28.3
Cc00_g31050 Coffea canephora HOM05D000535 ORTHO05D000427 2.3e-08 63.5 220 30.0
Haze_08460 Corylus avellana HOM05D000535 ORTHO05D000427 2.3e-08 63.5 182 29.7
Glyma.01G096200 Glycine max HOM05D000535 ORTHO05D011300 2.3e-08 63.5 221 28.1
Phvul.011G169800 Phaseolus vulgaris HOM05D000535 ORTHO05D000427 3.0e-08 63.2 168 30.4
PGSC0003DMG400010170 Solanum tuberosum HOM05D000535 ORTHO05D011982 6.7e-08 62.0 195 27.7
Nn3g18117 Nelumbo nucifera HOM05D000535 ORTHO05D000427 8.7e-08 61.6 244 28.3
EL10Ac9g20937 Beta vulgaris HOM05D000535 ORTHO05D000427 2.5e-07 60.1 187 30.5
Nn3g18120 Nelumbo nucifera HOM05D000535 ORTHO05D000427 2.5e-07 60.1 205 29.3
PGSC0003DMG400010149 Solanum tuberosum HOM05D000535 ORTHO05D000427 4.3e-07 59.3 225 29.8
SGA_v2.0_scaffold14G07091 Striga asiatica HOM05D000535 ORTHO05D000427 5.6e-07 58.9 155 34.8
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 9.6e-07 58.2 213 28.6
Potri.019G124500 Populus trichocarpa HOM05D010192 ORTHO05D012386 1.6e-06 57.4 188 32.4
CAN.G929.7 Capsicum annuum HOM05D000535 ORTHO05D011982 2.1e-06 57.0 217 31.3
Medtr2g072980 Medicago truncatula HOM05D000535 ORTHO05D000427 2.1e-06 57.0 228 27.2
Potri.019G122100 Populus trichocarpa HOM05D010192 ORTHO05D012386 2.1e-06 57.0 188 32.4
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.8e-06 56.6 151 32.5


User provided reference genes

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