Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 1.3e-120 436.4 228 100.0
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 5.4e-106 387.9 232 89.7
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 9.6e-103 377.1 233 87.1
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 4.3e-95 351.7 237 80.6
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 4.8e-94 348.2 231 80.5
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 9.0e-93 344.0 228 82.5
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 2.1e-86 322.8 239 76.2
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 1.5e-76 290.0 228 69.3
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 2.9e-75 285.8 189 76.7
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 2.9e-75 285.8 226 69.5
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 5.0e-75 285.0 226 69.0
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 5.0e-75 285.0 188 76.6
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 5.5e-74 281.6 228 67.5
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 6.1e-73 278.1 196 71.9
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 3.0e-72 275.8 189 74.1
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 8.8e-72 274.2 189 73.5
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 2.0e-71 273.1 206 69.9
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 2.5e-71 272.7 197 73.1
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 7.4e-71 271.2 211 67.3
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 2.8e-70 269.2 185 74.1
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 4.8e-70 268.5 202 68.3
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 8.2e-70 267.7 182 72.0
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 1.1e-69 267.3 192 69.3
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 1.4e-69 266.9 189 71.4
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 1.8e-69 266.5 188 70.2
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 4.1e-69 265.4 229 62.4
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 5.3e-69 265.0 188 70.2
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 9.1e-69 264.2 222 63.5
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 1.2e-68 263.8 182 72.0
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 1.5e-68 263.5 179 73.2
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 2.6e-68 262.7 214 64.0
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 3.4e-68 262.3 221 62.4
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 5.9e-68 261.5 189 69.8
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 1.0e-67 260.8 204 66.2
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 2.2e-67 259.6 231 61.5
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 2.9e-67 259.2 203 65.0
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 2.9e-67 259.2 195 70.3
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 2.9e-67 259.2 229 64.6
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 3.8e-67 258.8 180 75.6
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 6.5e-67 258.1 180 75.6
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 6.5e-67 258.1 193 67.9
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 6.5e-67 258.1 229 61.6
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 6.5e-67 258.1 183 69.4
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 2.5e-66 256.1 187 69.5
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 4.2e-66 255.4 205 66.3
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 5.5e-66 255.0 188 69.1
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 1.2e-65 253.8 188 68.1
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 1.6e-65 253.4 222 62.6
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.6e-65 252.3 195 64.6
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.6e-65 252.3 195 64.6
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 3.6e-65 252.3 268 56.0
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 4.7e-65 251.9 172 74.4
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 1.0e-64 250.8 195 69.7
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 1.0e-64 250.8 221 58.8
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 1.0e-64 250.8 200 64.0
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 1.8e-64 250.0 175 73.1
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.3e-64 249.6 171 73.1
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.9e-64 248.8 228 59.6
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 2.0e-63 246.5 245 57.1
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.4e-63 245.4 221 58.4
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 9.7e-63 244.2 214 62.6
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 2.8e-62 242.7 237 58.2
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 3.7e-62 242.3 216 60.2
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 4.8e-62 241.9 221 60.6
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 8.2e-62 241.1 204 65.2
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 8.2e-62 241.1 226 57.5
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 3.1e-61 239.2 185 67.6
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 5.3e-61 238.4 191 65.4
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 1.5e-60 236.9 219 62.1
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 3.5e-60 235.7 177 68.9
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.0e-59 234.2 177 68.4
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 2.9e-59 232.6 156 73.1
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 3.8e-59 232.3 177 68.4
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 7.2e-58 228.0 245 55.1
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 9.4e-58 227.6 235 54.5
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 2.3e-56 223.0 219 56.6
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 3.0e-56 222.6 196 58.7
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 3.9e-56 222.2 189 61.9
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 1.1e-55 220.7 181 65.7
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 2.0e-55 219.9 224 55.4
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 4.4e-55 218.8 189 60.8
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 1.3e-54 217.2 190 61.6
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 1.7e-54 216.9 229 55.0
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 1.7e-54 216.9 174 66.1
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 1.1e-53 214.2 188 61.7
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 1.1e-53 214.2 188 61.7
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 1.4e-53 213.8 194 59.8
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 1.4e-53 213.8 153 71.9
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 3.1e-53 212.6 189 61.4
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 7.7e-52 208.0 229 52.8
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 2.7e-41 172.9 152 59.2
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 5.2e-40 168.7 191 51.8
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 9.8e-39 164.5 99 79.8
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.2e-38 163.3 99 77.8
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 2.0e-36 156.8 164 53.7
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 2.5e-34 149.8 158 50.6
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 2.2e-30 136.7 137 58.4
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 5.4e-29 132.1 99 68.7
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 1.3e-27 127.5 151 45.0
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 2.3e-27 126.7 120 60.8
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 5.8e-23 112.1 62 83.9
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.7e-22 110.5 64 76.6
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 1.9e-21 107.1 91 62.6
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 3.6e-17 92.8 84 59.5
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 8.9e-16 88.2 111 43.2
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 6.4e-14 82.0 76 59.2
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.7e-12 76.6 59 64.4
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 2.3e-11 73.6 61 65.6
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.6e-11 72.0 61 62.3
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 2.3e-08 63.5 107 43.0
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 1.2e-07 61.2 92 37.0
Cre17.g714900 Chlamydomonas reinhardtii HOM05D007115 ORTHO05D008923 3.7e-06 56.2 170 28.8


User provided reference genes

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