Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 5.5e-99 364.4 196 100.0
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 3.1e-57 225.7 170 78.8
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 3.1e-57 225.7 170 78.8
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.8e-49 199.9 172 70.3
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.5e-35 153.7 139 68.3
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.1e-33 147.5 171 56.7
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 4.0e-33 145.6 171 56.1
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.3e-33 145.2 171 56.7
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.2e-32 144.1 192 52.1
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 2.2e-31 139.8 191 51.3
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 5.5e-30 135.2 181 50.8
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.0e-29 131.7 172 50.0
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 7.9e-29 131.3 168 53.0
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 7.9e-29 131.3 176 52.3
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 4.3e-27 125.6 173 50.9
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 7.4e-27 124.8 174 50.6
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.3e-26 124.0 173 48.6
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.1e-25 120.9 172 49.4
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.8e-25 120.2 103 67.0
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 6.9e-25 118.2 171 48.0
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.2e-24 117.5 172 46.5
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 2.0e-24 116.7 165 50.3
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 2.0e-24 116.7 172 48.3
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 2.0e-24 116.7 174 43.1
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 2.0e-24 116.7 173 49.7
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 2.6e-24 116.3 170 46.5
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.6e-24 116.3 155 51.6
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 3.4e-24 115.9 171 50.3
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 4.5e-24 115.5 176 45.5
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 5.8e-24 115.2 165 48.5
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 5.8e-24 115.2 172 44.8
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 7.6e-24 114.8 165 50.3
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 7.6e-24 114.8 170 50.0
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 2.2e-23 113.2 161 50.9
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 2.9e-23 112.8 161 50.9
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 6.5e-23 111.7 168 45.8
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 6.5e-23 111.7 171 44.4
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.4e-22 110.5 174 50.6
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.9e-22 110.2 163 45.4
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 1.9e-22 110.2 193 40.9
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 2.5e-22 109.8 166 50.6
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 5.5e-22 108.6 164 43.3
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.5e-22 108.6 170 48.2
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 5.5e-22 108.6 169 45.6
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 7.1e-22 108.2 176 48.9
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 7.1e-22 108.2 176 48.9
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.1e-22 108.2 170 47.6
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.1e-22 108.2 170 47.6
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 7.1e-22 108.2 171 45.0
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 7.1e-22 108.2 165 49.1
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.3e-22 107.8 176 44.3
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.2e-21 107.5 180 46.1
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.2e-21 107.5 167 49.7
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.2e-21 107.5 158 48.1
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.6e-21 107.1 177 44.6
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.6e-21 107.1 68 86.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.6e-21 107.1 172 46.5
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.1e-21 106.7 153 51.0
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.5e-21 105.9 170 47.1
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.6e-21 105.5 168 46.4
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 6.0e-21 105.1 172 44.8
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 6.0e-21 105.1 165 47.3
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 6.0e-21 105.1 176 45.5
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 7.9e-21 104.8 172 47.1
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 7.9e-21 104.8 174 48.3
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 7.9e-21 104.8 157 45.9
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 7.9e-21 104.8 169 46.7
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.0e-20 104.4 174 46.6
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.3e-20 104.0 169 45.6
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.3e-20 103.2 135 52.6
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.0e-20 102.8 135 48.9
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 3.0e-20 102.8 171 45.6
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 3.0e-20 102.8 184 44.6
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.0e-20 102.8 217 39.6
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 5.1e-20 102.1 167 44.3
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 5.1e-20 102.1 154 47.4
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 8.7e-20 101.3 158 47.5
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-19 100.9 170 46.5
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.1e-19 100.9 172 47.1
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 1.1e-19 100.9 172 43.6
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.5e-19 100.5 169 46.2
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.5e-19 100.5 171 47.4
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.5e-19 100.5 163 47.2
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.3e-19 99.4 173 45.7
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 5.7e-19 98.6 198 41.4
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.6e-18 97.1 167 44.3
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.2e-18 96.7 176 43.2
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 3.7e-18 95.9 184 42.9
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 8.2e-18 94.7 181 43.6
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.4e-17 93.2 152 48.0
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 5.3e-17 92.0 166 43.4
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 2.0e-16 90.1 101 55.4
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 4.5e-16 89.0 162 43.2
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 7.7e-16 88.2 119 48.7
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 2.2e-15 86.7 81 63.0
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 2.9e-15 86.3 205 36.6
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 3.8e-15 85.9 147 44.2
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 3.8e-15 85.9 147 44.2
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 5.0e-15 85.5 168 40.5
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.5e-15 85.1 169 41.4
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-14 84.3 170 42.9
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 3.2e-14 82.8 188 38.3
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 4.2e-14 82.4 161 42.2
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 7.2e-14 81.6 156 39.1
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 7.2e-14 81.6 154 44.2
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.7e-13 79.7 171 40.4
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 4.6e-13 79.0 164 42.1
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 4.6e-13 79.0 165 41.8
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 6.1e-13 78.6 172 37.2
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 6.1e-13 78.6 167 41.3
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.0e-12 77.8 110 50.9
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.0e-12 77.8 169 39.6
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 1.0e-12 77.8 160 39.4
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 2.5e-11 73.2 167 39.5
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 3.3e-11 72.8 127 46.5
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 5.7e-11 72.0 87 48.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 9.7e-11 71.2 157 36.9
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.3e-10 70.9 108 48.1
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 6.3e-10 68.6 108 47.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 8.2e-10 68.2 157 37.6
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.4e-09 67.4 112 45.5
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 4.1e-09 65.9 161 38.5
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 9.1e-09 64.7 155 38.7
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.6e-08 63.2 167 34.7
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 3.4e-08 62.8 96 49.0
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 4.5e-08 62.4 84 46.4
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 5.9e-08 62.0 124 40.3
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-07 61.2 115 42.6
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.3e-07 60.8 159 33.3
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.2e-07 60.1 70 52.9
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 3.8e-07 59.3 102 46.1
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.4e-06 57.4 165 36.4
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 3.2e-06 56.2 62 61.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 7.2e-06 55.1 174 33.3


User provided reference genes

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