Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 0.0e+00 1294.6 644 100.0
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 0.0e+00 1251.9 644 96.0
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 0.0e+00 1251.1 647 95.8
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 0.0e+00 1196.4 644 91.1
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 0.0e+00 1164.1 645 88.2
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 0.0e+00 1152.9 645 88.2
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 0.0e+00 1114.4 644 86.0
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.4e-260 902.1 653 67.8
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.6e-259 899.4 653 67.7
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 2.0e-254 882.5 651 69.3
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 4.9e-253 877.9 653 67.1
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 3.2e-252 875.2 650 65.5
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.8e-247 859.4 655 65.2
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 5.8e-246 854.4 656 65.9
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 7.6e-246 854.0 653 64.3
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.1e-244 850.1 654 64.7
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 1.2e-243 846.7 646 64.7
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 2.7e-243 845.5 651 65.1
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 7.8e-243 844.0 658 63.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.3e-242 843.2 652 64.7
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 3.0e-242 842.0 655 63.8
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 6.6e-242 840.9 648 64.7
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.1e-241 840.1 655 62.9
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 4.3e-241 838.2 656 63.6
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 2.8e-240 835.5 652 63.8
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 1.8e-239 832.8 657 63.6
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 3.4e-238 828.6 652 63.0
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 9.9e-238 827.0 646 63.6
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 9.9e-238 827.0 680 60.9
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 2.2e-237 825.9 656 62.5
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 4.9e-237 824.7 647 65.2
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 2.7e-235 818.9 646 63.5
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.7e-235 818.9 655 62.1
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.3e-234 816.6 656 63.1
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 6.6e-234 814.3 637 64.2
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.9e-233 812.8 659 61.8
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 4.3e-233 811.6 650 61.4
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 5.6e-233 811.2 655 61.8
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 8.1e-232 807.4 655 61.8
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 3.1e-231 805.4 657 61.6
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 5.3e-231 804.7 612 65.0
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 9.0e-231 803.9 655 62.1
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 2.0e-230 802.7 659 61.8
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 2.6e-230 802.4 652 62.4
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.4e-230 802.0 652 62.4
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 4.5e-230 801.6 655 60.9
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 7.6e-230 800.8 653 61.9
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 1.3e-229 800.0 655 61.2
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.3e-229 800.0 649 62.4
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 4.9e-229 798.1 655 61.2
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 2.4e-228 795.8 654 61.2
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 6.0e-227 791.2 653 62.5
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 3.0e-226 788.9 656 60.7
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 3.9e-226 788.5 651 61.9
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 5.1e-226 788.1 646 60.8
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 6.7e-226 787.7 657 61.2
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.1e-225 786.9 618 64.1
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 1.5e-225 786.6 659 61.3
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 3.3e-225 785.4 648 61.1
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.3e-224 783.5 647 60.7
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.3e-224 783.5 657 60.7
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.6e-224 783.1 655 61.1
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 2.1e-224 782.7 655 61.7
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.1e-223 780.4 658 60.6
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 3.1e-223 778.9 648 61.0
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 3.1e-223 778.9 648 61.0
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 4.0e-223 778.5 651 59.8
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 5.8e-222 774.6 648 60.2
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 9.9e-222 773.9 660 60.0
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 9.9e-222 773.9 650 60.5
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 2.2e-221 772.7 658 59.6
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 7.1e-220 767.7 666 59.9
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 4.3e-217 758.4 659 59.2
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.6e-216 756.5 647 60.0
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.6e-216 756.5 656 60.2
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.8e-215 753.1 618 64.1
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 2.4e-215 752.7 627 61.1
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 3.1e-215 752.3 627 61.2
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 5.8e-214 748.0 654 56.7
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 2.3e-210 736.1 651 58.1
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 1.5e-209 733.4 650 56.9
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 3.4e-206 722.2 539 65.1
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.3e-205 720.3 642 57.2
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 3.3e-201 705.7 681 55.5
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 2.6e-193 679.5 649 53.3
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 8.5e-189 664.5 577 58.2
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 9.4e-188 661.0 583 55.6
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 7.7e-182 641.3 617 56.2
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 2.2e-181 639.8 689 49.9
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 5.0e-181 638.6 582 57.4
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 3.6e-179 632.5 647 52.2
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 7.0e-175 618.2 487 63.7
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.3e-157 560.8 505 57.2
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 4.7e-155 552.4 592 51.0
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.7e-142 510.0 650 42.6
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 6.0e-142 508.8 539 51.0
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 8.1e-139 498.4 641 43.4
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 8.6e-133 478.4 653 42.6
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 6.8e-130 468.8 476 53.4
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 3.0e-125 453.4 255 84.7
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 3.9e-109 399.8 387 49.9
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.0e-101 375.2 482 45.6
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 3.3e-100 370.2 427 46.4
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 8.7e-93 345.5 637 37.2
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.5e-92 344.7 178 86.5
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 5.7e-92 342.8 344 50.6
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 8.2e-91 339.0 304 58.9
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 2.1e-86 324.3 363 46.3
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 6.5e-80 302.8 197 71.6
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.0e-56 223.4 170 65.3
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 7.2e-55 219.5 104 94.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 1.5e-52 211.8 106 86.8
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 1.3e-48 198.7 268 42.2
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 1.5e-44 185.3 217 43.3
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 9.2e-34 149.4 137 57.7
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 9.2e-34 149.4 200 39.5
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.3e-32 145.6 486 28.6
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.3e-32 144.8 175 44.6
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 6.8e-29 133.3 86 77.9
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 7.5e-28 129.8 154 46.1
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 6.4e-27 126.7 58 89.7
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.1e-26 124.0 102 60.8
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 8.6e-24 116.3 83 66.3
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 6.2e-22 110.2 83 59.0
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.4e-18 99.0 72 62.5
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 8.6e-16 89.7 76 60.5
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 1.5e-15 89.0 74 62.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 1.9e-15 88.6 74 60.8
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 7.3e-15 86.7 74 60.8
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 9.6e-15 86.3 74 59.5
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 6.2e-14 83.6 74 59.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.3e-11 75.9 93 50.5
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 8.4e-11 73.2 75 54.7
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 2.7e-09 68.2 97 40.2
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 1.0e-08 66.2 99 41.4


User provided reference genes

Program Settings