Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.9e-168 595.1 298 100.0
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 2.0e-164 582.4 298 97.0
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 5.7e-148 527.7 293 88.4
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 6.6e-144 514.2 311 84.2
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 6.2e-126 454.5 292 79.1
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 2.3e-125 452.6 293 73.4
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 2.0e-124 449.5 293 73.0
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 3.2e-122 442.2 293 73.0
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 9.2e-122 440.7 290 72.4
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 2.1e-121 439.5 290 71.4
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 4.6e-121 438.3 292 71.2
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 2.3e-120 436.0 293 71.3
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 5.1e-120 434.9 295 72.9
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.1e-119 433.7 290 71.4
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.9e-119 433.0 290 70.3
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 4.3e-119 431.8 290 70.7
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 9.6e-119 430.6 293 70.0
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 1.6e-118 429.9 291 70.1
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.8e-118 429.1 293 70.6
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.6e-118 428.7 293 69.6
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 6.2e-118 427.9 299 75.3
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 6.2e-118 427.9 290 70.3
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.1e-117 427.2 295 70.5
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.1e-117 427.2 309 67.6
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-117 426.8 293 74.1
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 3.1e-117 425.6 291 68.7
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 2.0e-116 422.9 290 70.3
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.0e-116 422.9 290 70.0
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 3.8e-115 418.7 290 69.7
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 4.9e-115 418.3 297 67.0
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 8.4e-115 417.5 294 67.7
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.4e-114 416.0 294 67.3
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.7e-113 412.5 294 67.0
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 3.5e-113 412.1 294 69.4
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 4.6e-113 411.8 290 67.9
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 4.6e-113 411.8 293 66.6
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.3e-112 410.2 294 67.0
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.7e-112 409.8 293 66.2
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 2.3e-112 409.5 297 72.1
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 5.6e-111 404.8 295 67.8
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 9.6e-111 404.1 294 66.0
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.1e-110 402.9 293 69.3
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 6.2e-110 401.4 293 69.3
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 1.1e-109 400.6 290 69.7
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 9.0e-109 397.5 294 64.6
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 1.2e-108 397.1 295 66.4
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.4e-108 395.2 317 63.1
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 5.8e-108 394.8 292 63.4
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.3e-107 393.7 294 64.3
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.3e-107 393.7 294 64.3
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 2.9e-107 392.5 297 67.3
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 6.4e-107 391.3 274 73.4
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 6.4e-107 391.3 293 63.5
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 8.4e-107 391.0 201 95.5
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 1.1e-106 390.6 294 66.0
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 2.4e-106 389.4 295 64.4
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 2.4e-106 389.4 295 67.1
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.2e-105 387.1 288 62.8
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.3e-104 383.6 311 61.1
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 2.3e-104 382.9 292 61.3
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 5.1e-104 381.7 267 71.9
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 6.6e-104 381.3 291 64.6
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.5e-103 380.2 291 64.9
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 4.3e-103 378.6 292 64.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.6e-102 375.6 294 62.6
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 8.1e-102 374.4 291 63.2
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 7.6e-100 367.9 294 60.9
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 2.9e-99 365.9 238 74.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 1.4e-98 363.6 293 60.1
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 1.9e-98 363.2 326 57.4
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 5.5e-98 361.7 291 59.1
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 2.1e-97 359.8 257 66.5
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.7e-97 359.4 361 52.4
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 3.9e-96 355.5 299 59.2
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 5.6e-95 351.7 276 62.3
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.0e-91 340.9 259 62.5
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 3.8e-91 339.0 298 55.0
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 4.9e-91 338.6 292 58.6
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 4.9e-91 338.6 292 55.8
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.4e-91 337.8 310 56.5
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.2e-90 335.9 273 61.5
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 9.3e-90 334.3 257 64.2
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 6.3e-86 321.6 230 73.0
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 6.9e-85 318.2 283 57.6
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 1.3e-83 313.9 227 69.6
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 3.8e-83 312.4 241 68.5
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.5e-82 309.7 209 71.3
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 4.2e-82 308.9 201 72.6
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 1.0e-75 287.7 257 56.4
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 5.0e-75 285.4 200 67.0
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 3.3e-71 272.7 286 50.3
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 8.2e-70 268.1 291 46.0
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 9.1e-69 264.6 304 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 5.9e-68 261.9 290 45.9
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 5.9e-68 261.9 175 69.1
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.9e-67 259.6 293 44.7
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 6.5e-67 258.5 293 49.1
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 2.1e-65 253.4 199 61.3
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 7.9e-65 251.5 184 65.8
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 7.7e-60 235.0 188 65.4
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 5.0e-59 232.3 207 55.6
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.4e-53 214.2 214 51.9
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.4e-53 214.2 175 60.0
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 1.1e-50 204.5 185 56.2
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 5.2e-48 195.7 237 41.4
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 1.8e-40 170.6 138 60.1
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 8.8e-40 168.3 137 60.6
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.3e-35 153.7 96 74.0
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 3.3e-34 149.8 96 77.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 4.3e-34 149.4 330 32.4
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 4.3e-34 149.4 95 74.7
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 4.7e-33 146.0 146 57.5
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.9e-30 136.7 94 69.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 2.7e-28 130.2 95 64.2
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 5.9e-28 129.0 126 52.4
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.5e-26 123.6 107 58.9
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.0e-24 118.2 93 63.4
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.3e-22 111.3 81 60.5
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.3e-22 111.3 119 47.9
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.7e-22 110.9 95 63.2
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 1.7e-22 110.9 171 35.1
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 2.9e-22 110.2 68 75.0
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 6.4e-22 109.0 99 54.5
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 8.3e-22 108.6 96 59.4
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.4e-21 107.1 80 58.8
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 3.0e-19 100.1 254 28.7
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.9e-18 97.4 91 50.5
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.8e-17 93.6 99 49.5
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-15 87.8 55 63.6
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 9.2e-13 78.6 53 75.5
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 8.6e-11 72.0 53 58.5
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.1e-10 71.6 65 55.4


User provided reference genes

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