Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 2.9e-111 405.2 199 100.0
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 3.2e-102 375.2 199 95.0
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 3.2e-102 375.2 199 95.0
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 6.9e-97 357.5 201 88.1
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 5.8e-96 354.4 201 87.6
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.9e-94 349.4 201 86.6
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 4.2e-62 241.9 206 59.2
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 2.6e-59 232.6 163 74.8
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 4.4e-59 231.9 202 59.4
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 6.3e-58 228.0 206 59.7
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 5.3e-57 224.9 206 56.8
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.7e-55 219.9 202 56.4
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.4e-54 216.9 199 57.8
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.2e-53 213.8 260 48.8
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.2e-53 213.8 209 55.5
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 3.6e-53 212.2 205 55.1
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 4.7e-53 211.8 202 56.9
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 4.7e-53 211.8 202 56.9
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.8e-52 209.9 205 52.2
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.3e-52 209.5 208 54.3
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.9e-52 208.8 207 53.6
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.9e-52 208.8 207 53.6
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.5e-51 206.8 203 54.2
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 3.3e-51 205.7 207 52.7
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 3.3e-51 205.7 199 58.3
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.3e-51 205.7 207 53.1
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 5.7e-51 204.9 200 55.5
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.7e-51 204.9 207 52.7
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.3e-50 203.8 198 59.1
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.7e-50 202.2 200 56.0
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.7e-50 202.2 199 54.8
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 4.8e-50 201.8 214 51.9
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.1e-49 200.7 207 52.2
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.4e-49 200.3 199 55.8
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.8e-49 199.9 209 54.1
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.8e-49 199.9 205 50.2
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.8e-49 199.9 205 52.7
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.4e-49 199.5 205 53.7
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.4e-49 199.5 203 53.7
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 2.4e-49 199.5 196 54.6
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 4.1e-49 198.7 203 51.2
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 4.1e-49 198.7 200 54.0
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 5.3e-49 198.4 207 54.1
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 5.3e-49 198.4 206 52.9
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 5.3e-49 198.4 198 53.5
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.2e-48 197.2 204 53.4
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.2e-48 197.2 204 53.4
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.6e-48 196.8 203 49.3
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 1.6e-48 196.8 203 53.2
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 2.0e-48 196.4 206 52.9
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 2.6e-48 196.1 206 50.5
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.6e-48 196.1 199 51.8
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.5e-48 195.7 199 51.8
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 3.5e-48 195.7 205 53.7
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 7.7e-48 194.5 202 49.5
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 7.7e-48 194.5 211 52.6
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.0e-47 194.1 198 50.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.0e-47 194.1 203 52.2
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.3e-47 193.7 198 48.0
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.7e-47 193.4 206 51.5
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.2e-47 193.0 200 49.5
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.2e-47 193.0 200 52.5
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.2e-47 193.0 206 51.0
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.9e-47 192.6 202 51.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.8e-47 192.2 203 52.7
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 5.0e-47 191.8 203 50.7
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 5.0e-47 191.8 211 52.1
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 6.5e-47 191.4 204 51.5
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 8.5e-47 191.0 203 52.2
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-46 190.7 198 50.0
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.1e-46 190.7 198 50.0
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.5e-46 190.3 204 49.0
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.5e-46 190.3 223 49.3
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.5e-46 189.5 215 50.2
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 2.5e-46 189.5 203 49.3
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.2e-46 189.1 198 49.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 3.2e-46 189.1 200 51.5
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 3.2e-46 189.1 202 49.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.2e-46 189.1 273 42.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 4.2e-46 188.7 202 52.5
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 7.2e-46 188.0 197 50.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 7.2e-46 188.0 197 50.8
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.2e-45 187.2 200 51.5
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.6e-45 186.8 209 51.7
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 2.1e-45 186.4 197 50.8
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 2.1e-45 186.4 203 51.2
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 2.7e-45 186.0 205 51.7
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 8.0e-45 184.5 203 50.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 8.0e-45 184.5 204 51.0
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 8.0e-45 184.5 202 53.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.4e-44 183.7 200 51.5
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.4e-44 183.7 201 50.2
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.4e-44 183.7 202 46.5
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.8e-44 183.3 195 49.2
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.3e-44 183.0 191 52.4
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.3e-44 183.0 195 50.8
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 8.8e-44 181.0 203 48.3
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.2e-43 180.6 203 48.8
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.3e-43 179.1 200 47.5
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.3e-43 179.1 200 53.5
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.3e-43 179.1 200 53.5
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 5.7e-43 178.3 200 49.0
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 9.7e-43 177.6 197 51.3
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.7e-42 176.8 199 49.7
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.2e-42 176.4 201 49.3
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 2.8e-42 176.0 198 49.5
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 2.8e-42 176.0 195 53.3
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 4.8e-42 175.3 203 50.2
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 6.3e-42 174.9 200 46.5
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 6.3e-42 174.9 224 45.5
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 6.3e-42 174.9 213 45.5
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.2e-42 174.5 199 49.2
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 8.2e-42 174.5 209 47.4
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.1e-41 174.1 157 60.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.1e-41 174.1 209 47.4
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.1e-41 174.1 198 46.0
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-41 173.7 200 50.0
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.4e-41 173.7 200 50.0
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.4e-41 173.7 200 50.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 3.1e-41 172.6 174 52.9
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 5.3e-41 171.8 198 48.0
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 7.0e-41 171.4 209 45.9
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.7e-40 169.5 197 47.2
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.5e-40 169.1 198 48.5
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.3e-39 167.2 204 46.1
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.3e-39 167.2 204 46.1
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 8.5e-39 164.5 209 46.4
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.9e-38 163.3 183 51.4
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.8e-36 156.8 156 55.1
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.0e-36 155.6 196 46.9
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 4.0e-36 155.6 332 34.9
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.5e-35 153.7 203 44.8
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.4e-35 152.1 196 45.9
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 4.4e-35 152.1 209 42.6
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 5.7e-35 151.8 207 43.0
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.7e-34 150.2 203 42.4
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.7e-34 149.1 90 76.7
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 7.0e-33 144.8 204 44.1
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 7.0e-33 144.8 90 77.8
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 7.0e-33 144.8 197 43.1
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.6e-32 143.7 207 41.1
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 2.0e-32 143.3 146 51.4
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.7e-31 140.2 179 46.9
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.1e-30 137.5 146 52.7
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 6.1e-29 131.7 127 53.5
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.4e-28 130.6 157 46.5
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.8e-28 130.2 152 46.7
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.0e-28 129.4 100 59.0
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 5.2e-28 128.6 92 66.3
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.2e-27 127.5 204 40.7
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.2e-26 123.2 156 44.2
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.1e-25 120.9 101 62.4
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.4e-25 119.8 165 44.8
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 5.4e-25 118.6 128 47.7
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.6e-24 117.1 131 48.1
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.9e-22 110.2 154 39.6
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.2e-20 102.1 124 43.5
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 7.8e-16 88.2 151 36.4
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 5.0e-15 85.5 73 60.3
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 6.6e-15 85.1 196 36.7
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.5e-11 73.9 54 63.0
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.6e-11 73.2 44 79.5
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 9.8e-11 71.2 121 36.4
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.7e-10 69.3 44 72.7
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.7e-10 69.3 44 72.7
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 6.4e-10 68.6 79 46.8
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 8.3e-10 68.2 136 38.2
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.2e-09 66.2 120 36.7
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 6.0e-08 62.0 97 35.1
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-06 57.4 66 45.5


User provided reference genes

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