Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.1e-79 302.0 261 100.0
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.1e-79 302.0 261 100.0
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 2.3e-74 284.3 262 93.9
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.2e-49 202.2 268 74.3
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 3.4e-49 200.7 268 71.6
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 5.6e-36 156.8 265 67.2
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 2.1e-30 138.3 438 51.4
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 2.1e-30 138.3 296 58.4
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 3.1e-26 124.4 282 58.2
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 6.8e-26 123.2 292 52.7
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 8.9e-26 122.9 285 56.5
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 8.9e-26 122.9 286 53.5
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 2.0e-25 121.7 241 53.5
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.3e-24 119.0 197 40.6
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 2.2e-24 118.2 236 51.3
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 2.4e-23 114.8 286 55.2
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 2.4e-23 114.8 286 55.2
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 3.2e-23 114.4 187 41.7
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 5.4e-23 113.6 264 55.3
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 7.1e-23 113.2 130 70.0
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 4.6e-22 110.5 262 56.5
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 6.0e-22 110.2 177 41.8
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 6.0e-22 110.2 184 39.1
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 7.8e-22 109.8 286 54.9
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 2.3e-21 108.2 143 85.3
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 5.1e-21 107.1 206 37.4
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 5.1e-21 107.1 272 55.1
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 5.1e-21 107.1 282 52.8
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 5.1e-21 107.1 197 38.6
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 8.6e-21 106.3 173 41.0
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 9.6e-20 102.8 108 87.0
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 9.6e-20 102.8 191 37.2
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 2.8e-19 101.3 294 48.6
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 2.8e-19 101.3 130 71.5
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 3.6e-19 100.9 269 55.4
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 4.7e-19 100.5 201 38.3
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 8.1e-19 99.8 180 38.3
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 8.1e-19 99.8 178 39.3
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 1.8e-18 98.6 249 48.2
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 6.8e-18 96.7 201 37.8
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 6.8e-18 96.7 184 35.9
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 8.9e-18 96.3 279 53.8
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 8.9e-18 96.3 286 53.8
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 2.0e-17 95.1 234 47.9
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 2.6e-17 94.7 267 56.6
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 2.6e-17 94.7 176 36.9
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 3.4e-17 94.4 175 38.9
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 9.9e-17 92.8 273 54.2
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 1.7e-16 92.0 173 35.8
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 1.7e-16 92.0 155 80.6
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 2.2e-16 91.7 267 53.6
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 2.9e-16 91.3 159 75.5
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 3.8e-16 90.9 264 54.2
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 3.8e-16 90.9 271 54.6
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 4.9e-16 90.5 275 54.9
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 4.9e-16 90.5 274 53.3
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 8.4e-16 89.7 183 35.0
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 8.4e-16 89.7 169 76.9
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 8.4e-16 89.7 146 84.2
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 1.9e-15 88.6 271 53.9
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.4e-15 88.2 159 66.7
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 4.2e-15 87.4 72 59.7
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 5.4e-15 87.0 130 70.0
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 5.4e-15 87.0 182 35.2
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 7.1e-15 86.7 269 54.6
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 1.6e-14 85.5 170 72.9
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.6e-14 85.5 269 54.3
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 2.1e-14 85.1 172 35.5
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 2.7e-14 84.7 169 73.4
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 2.7e-14 84.7 170 37.1
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 3.5e-14 84.3 180 35.0
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 4.6e-14 84.0 163 52.1
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 4.6e-14 84.0 276 51.4
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 7.8e-14 83.2 136 80.1
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.0e-13 82.8 188 34.6
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 1.3e-13 82.4 124 72.6
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 2.3e-13 81.6 71 60.6
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 3.0e-13 81.3 71 60.6
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 5.1e-13 80.5 71 60.6
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 5.1e-13 80.5 170 74.1
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 8.7e-13 79.7 239 43.1
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 3.3e-12 77.8 165 75.2
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.3e-12 77.8 180 36.1
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.3e-11 75.9 232 47.8
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 3.6e-11 74.3 116 62.1
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 8.1e-11 73.2 181 31.5
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.4e-10 71.6 177 34.5
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 5.3e-10 70.5 120 71.7
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 9.0e-10 69.7 189 31.2
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 9.0e-10 69.7 52 57.7
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 1.5e-09 68.9 68 54.4
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.6e-09 68.2 64 56.2
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 7.6e-09 66.6 50 66.0
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 7.6e-09 66.6 53 60.4
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.3e-08 65.9 168 32.1
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 2.9e-08 64.7 179 29.1
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 2.4e-07 61.6 56 58.9
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 4.2e-07 60.8 67 50.7
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 5.4e-07 60.5 66 47.0
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 7.1e-07 60.1 64 45.3
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 7.1e-07 60.1 64 45.3
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 1.2e-06 59.3 69 49.3
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 2.7e-06 58.2 71 46.5
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 3.5e-06 57.8 58 46.6
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 6.0e-06 57.0 67 49.3


User provided reference genes

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