Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.0e-34 149.4 73 100.0
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 9.1e-31 136.3 68 98.5
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.6e-30 135.6 68 98.5
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.5e-30 134.0 68 97.1
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-29 132.1 68 92.6
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 4.2e-28 127.5 68 88.2
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.7e-27 124.0 68 83.8
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.7e-27 124.0 68 83.8
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 6.1e-27 123.6 68 86.8
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 6.1e-27 123.6 68 85.3
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 8.0e-27 123.2 68 83.8
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.8e-26 122.1 68 86.8
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.8e-26 122.1 68 86.8
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.8e-26 122.1 68 86.8
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.8e-26 122.1 68 85.3
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.3e-26 121.7 68 85.3
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.0e-26 121.3 68 83.8
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.0e-26 121.3 68 83.8
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 4.0e-26 120.9 68 83.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 85.3
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 83.8
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 83.8
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 85.3
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 86.8
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 80.9
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 80.9
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 80.9
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 5.2e-26 120.6 68 80.9
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 6.8e-26 120.2 68 85.3
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 6.8e-26 120.2 68 83.8
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 6.8e-26 120.2 68 83.8
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 6.8e-26 120.2 68 83.8
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 8.8e-26 119.8 68 82.4
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 8.8e-26 119.8 68 83.8
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 8.8e-26 119.8 68 83.8
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 8.8e-26 119.8 62 90.3
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 8.8e-26 119.8 68 83.8
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.2e-25 119.4 68 82.4
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.2e-25 119.4 68 83.8
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 83.8
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 83.8
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 83.8
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 83.8
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 83.8
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 83.8
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 83.8
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 83.8
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.5e-25 119.0 68 85.3
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.0e-25 118.6 68 82.4
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 2.0e-25 118.6 68 83.8
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.0e-25 118.6 67 82.1
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 2.0e-25 118.6 67 83.6
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 2.6e-25 118.2 68 83.8
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.6e-25 118.2 68 85.3
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.6e-25 118.2 68 82.4
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 2.6e-25 118.2 68 80.9
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.6e-25 118.2 62 90.3
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 2.6e-25 118.2 68 80.9
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.6e-25 118.2 68 80.9
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 3.4e-25 117.9 68 82.4
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 3.4e-25 117.9 68 82.4
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 3.4e-25 117.9 68 82.4
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.4e-25 117.9 68 82.4
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.4e-25 117.9 68 82.4
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 3.4e-25 117.9 68 79.4
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.4e-25 117.9 67 82.1
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.4e-25 117.9 68 83.8
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 4.4e-25 117.5 68 82.4
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 4.4e-25 117.5 68 80.9
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 4.4e-25 117.5 68 80.9
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 4.4e-25 117.5 63 87.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 4.4e-25 117.5 67 80.6
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 5.7e-25 117.1 68 82.4
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 5.7e-25 117.1 68 82.4
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.7e-25 117.1 68 82.4
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 7.5e-25 116.7 68 82.4
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 7.5e-25 116.7 68 80.9
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 7.5e-25 116.7 68 82.4
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 9.8e-25 116.3 68 82.4
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 9.8e-25 116.3 68 82.4
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 9.8e-25 116.3 68 80.9
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 9.8e-25 116.3 68 80.9
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 9.8e-25 116.3 68 80.9
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.3e-24 115.9 68 82.4
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.3e-24 115.9 68 80.9
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 1.3e-24 115.9 68 83.8
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.3e-24 115.9 68 82.4
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.3e-24 115.9 68 79.4
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.7e-24 115.5 68 80.9
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-24 115.5 68 80.9
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.7e-24 115.5 68 80.9
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.2e-24 115.2 68 80.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.2e-24 115.2 68 77.9
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 2.2e-24 115.2 68 77.9
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 2.2e-24 115.2 68 79.4
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 2.2e-24 115.2 68 80.9
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.8e-24 114.8 68 79.4
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.8e-24 114.8 68 79.4
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 2.8e-24 114.8 68 79.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 2.8e-24 114.8 68 77.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 2.8e-24 114.8 68 79.4
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.7e-24 114.4 68 77.9
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 3.7e-24 114.4 68 77.9
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 3.7e-24 114.4 68 80.9
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 4.9e-24 114.0 68 77.9
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 4.9e-24 114.0 68 79.4
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 4.9e-24 114.0 68 77.9
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.3e-24 113.6 68 79.4
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.3e-24 113.6 68 79.4
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 6.3e-24 113.6 68 77.9
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.1e-23 112.8 68 76.5
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.1e-23 112.8 68 79.4
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.4e-23 112.5 68 79.4
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.8e-23 112.1 68 77.9
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.8e-23 112.1 68 77.9
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.4e-23 111.7 65 81.5
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.4e-23 111.7 68 79.4
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.4e-23 111.7 68 79.4
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.1e-23 111.3 68 77.9
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 4.1e-23 110.9 65 80.0
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 5.4e-23 110.5 65 80.0
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 5.4e-23 110.5 68 76.5
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 5.4e-23 110.5 68 76.5
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.2e-22 109.4 67 79.1
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.6e-22 109.0 65 78.5
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-22 108.6 65 76.9
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 2.7e-22 108.2 68 75.0
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 3.5e-22 107.8 68 75.0
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.5e-22 107.5 67 77.6
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 4.5e-22 107.5 65 76.9
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 4.5e-22 107.5 65 76.9
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 7.7e-22 106.7 68 73.5
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 9.5e-20 99.8 67 71.6
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.2e-19 99.4 67 70.1
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.2e-19 99.4 67 70.1
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.6e-19 99.0 65 75.4
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.1e-19 98.6 68 72.1
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 6.8e-18 93.6 67 62.7
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 6.3e-16 87.0 64 62.5
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 7.0e-15 83.6 60 70.0
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 4.7e-11 70.9 41 75.6
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 6.1e-11 70.5 66 48.5
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 6.8e-10 67.0 67 46.3
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.9e-07 58.9 78 42.3
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.6e-06 55.8 66 42.4
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.7e-06 55.1 63 44.4


User provided reference genes

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