Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 0.0e+00 1147.1 608 100.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.6e-308 1059.7 700 83.6
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 5.6e-307 1057.0 700 83.7
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 4.7e-290 1000.7 623 84.1
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 2.9e-287 991.5 619 84.5
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.7e-284 982.2 615 83.6
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.6e-245 852.8 627 73.7
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.4e-209 733.4 622 62.9
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.8e-201 706.4 635 61.7
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.4e-193 679.5 616 60.1
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 3.5e-192 675.6 625 57.6
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.2e-189 667.2 649 57.0
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.6e-189 666.8 641 58.7
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 2.8e-189 666.0 630 59.4
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.5e-187 660.2 621 57.0
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 3.4e-187 659.1 621 57.2
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.7e-187 658.3 621 56.7
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 4.9e-186 655.2 612 58.8
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 6.4e-186 654.8 623 57.8
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 5.4e-185 651.7 626 57.7
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.3e-182 642.5 619 57.5
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.2e-181 640.6 629 56.6
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.4e-180 637.1 626 57.3
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.4e-180 637.1 649 55.8
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 6.4e-178 628.2 605 56.4
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 8.3e-178 627.9 624 57.1
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.0e-175 620.9 621 56.8
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.3e-175 620.5 625 57.0
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.0e-175 619.4 625 56.6
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.6e-173 612.5 628 56.7
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.0e-171 606.7 615 54.1
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.0e-171 606.7 622 56.8
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 9.9e-171 604.4 644 53.4
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.3e-170 604.0 614 54.4
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 3.7e-170 602.4 578 57.8
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 4.9e-170 602.1 627 52.6
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 4.9e-170 602.1 626 53.7
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 2.1e-168 596.7 626 54.2
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 6.0e-168 595.1 518 62.0
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.5e-166 589.7 639 56.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 3.3e-166 589.3 621 53.6
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.8e-165 586.3 688 52.6
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 5.8e-163 578.6 629 54.4
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.8e-163 578.6 615 53.5
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.2e-162 576.6 577 55.5
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 7.1e-161 571.6 623 52.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 1.2e-160 570.9 630 52.1
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-159 567.4 588 56.5
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 2.3e-159 566.6 626 52.7
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 3.0e-159 566.2 628 55.6
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.4e-156 557.4 587 54.0
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 5.2e-156 555.4 578 58.8
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 9.9e-155 551.2 629 51.2
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 9.9e-155 551.2 626 51.3
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 4.2e-153 545.8 620 52.6
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 4.2e-153 545.8 634 50.0
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 9.3e-153 544.7 627 51.4
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 6.0e-152 542.0 624 50.2
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.5e-150 537.3 635 49.4
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.9e-150 537.0 670 48.1
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 3.3e-150 536.2 629 54.1
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 2.4e-148 530.0 627 50.1
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 3.1e-148 529.6 649 52.9
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 4.0e-148 529.3 663 50.4
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 4.0e-148 529.3 663 50.4
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 5.3e-148 528.9 620 51.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.5e-147 527.3 624 51.3
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 7.6e-147 525.0 624 51.1
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 9.9e-147 524.6 631 50.1
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 3.8e-146 522.7 634 48.9
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 3.8e-146 522.7 625 50.1
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.1e-145 521.2 617 52.8
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.2e-144 517.7 633 49.3
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.1e-144 516.9 620 50.0
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 2.1e-144 516.9 629 48.5
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 7.9e-144 515.0 630 49.0
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 7.9e-144 515.0 593 50.3
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.0e-143 514.6 619 51.9
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 3.9e-143 512.7 634 49.4
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.3e-141 507.7 622 48.4
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 6.0e-136 488.8 622 48.7
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 2.3e-135 486.9 602 47.5
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 3.7e-133 479.6 487 54.2
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.5e-131 474.2 635 45.8
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.5e-131 474.2 635 45.8
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 3.8e-130 469.5 622 48.9
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.2e-128 464.5 641 49.1
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.7e-128 463.4 630 49.7
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 4.6e-128 462.6 638 44.0
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 3.0e-127 459.9 638 43.9
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 5.1e-127 459.1 611 47.6
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 4.3e-126 456.1 630 48.4
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.4e-124 451.1 628 46.8
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.2e-122 443.7 614 50.5
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.9e-122 443.4 572 47.6
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.2e-120 438.0 451 54.5
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 3.3e-118 429.9 409 56.5
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 4.3e-118 429.5 608 48.7
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 2.5e-113 413.7 429 54.3
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 8.2e-109 398.7 357 59.4
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.7e-101 374.4 620 41.5
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 1.5e-97 361.3 664 39.5
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 4.4e-86 323.2 296 57.8
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.7e-83 313.9 180 87.8
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.2e-80 305.1 552 38.4
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.5e-78 298.1 701 35.2
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.3e-65 253.8 252 59.5
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 2.7e-59 234.2 465 37.8
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.7e-58 231.5 127 89.0
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 2.9e-53 214.2 275 47.3
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.5e-49 201.8 509 32.2
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 4.3e-49 200.3 276 42.0
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.9e-44 184.9 131 69.5
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.3e-41 174.1 504 31.0
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 3.6e-40 170.6 139 61.9
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.4e-36 158.7 284 42.6
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.6e-35 155.2 140 63.6
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.6e-33 146.7 168 50.0
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.6e-33 146.7 113 62.8
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.1e-32 144.8 102 68.6
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.1e-28 132.5 201 42.8
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.4e-28 132.1 658 26.3
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 5.4e-28 130.2 505 27.1
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 6.7e-26 123.2 557 24.1
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.8e-23 115.2 75 69.3
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 2.4e-23 114.8 177 46.9
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 4.6e-19 100.5 135 42.2
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 6.0e-19 100.1 50 96.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 8.7e-18 96.3 200 37.0
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 3.3e-17 94.4 109 47.7
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 1.1e-15 89.4 75 64.0
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.4e-15 89.0 149 34.9
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 1.8e-15 88.6 87 54.0
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.2e-14 85.9 171 38.0
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 6.1e-11 73.6 132 42.4
Solyc02g062813.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.0e-10 72.8 37 94.6
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 1.9e-09 68.6 66 50.0
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.3e-09 67.8 72 54.2


User provided reference genes

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