Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 1.2e-67 259.6 122 100.0
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 4.9e-61 237.7 122 93.4
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 2.0e-59 232.3 122 91.8
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 7.1e-44 180.6 124 73.4
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 5.1e-42 174.5 122 73.0
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 2.1e-40 169.1 121 71.9
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 5.8e-38 161.0 121 70.2
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 7.1e-20 100.9 74 66.2
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 8.7e-18 94.0 120 46.7
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 3.6e-16 88.6 101 44.6
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 1.1e-15 87.0 106 46.2
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 9.0e-15 84.0 118 41.5
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 9.0e-15 84.0 135 38.5
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 1.2e-14 83.6 110 40.0
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 4.5e-14 81.6 120 40.8
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 5.8e-14 81.3 47 63.8
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 9.9e-14 80.5 130 43.8
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 9.9e-14 80.5 102 43.1
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 1.3e-13 80.1 126 40.5
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 1.7e-13 79.7 139 36.7
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 1.7e-13 79.7 104 43.3
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 2.2e-13 79.3 131 34.4
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 2.9e-13 79.0 106 40.6
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 2.9e-13 79.0 48 64.6
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 6.4e-13 77.8 123 39.8
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 8.4e-13 77.4 131 37.4
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 8.4e-13 77.4 120 38.3
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 8.4e-13 77.4 73 46.6
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 1.1e-12 77.0 106 39.6
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 1.1e-12 77.0 126 36.5
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.9e-12 76.3 107 41.1
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 1.9e-12 76.3 47 59.6
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 2.4e-12 75.9 73 46.6
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 5.4e-12 74.7 120 37.5
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 7.1e-12 74.3 126 39.7
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 1.2e-11 73.6 126 37.3
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 2.1e-11 72.8 106 37.7
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 2.7e-11 72.4 49 61.2
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 2.7e-11 72.4 49 61.2
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 2.7e-11 72.4 107 37.4
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 2.7e-11 72.4 90 35.6
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 3.5e-11 72.0 107 37.4
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 3.5e-11 72.0 122 38.5
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 7.9e-11 70.9 123 38.2
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 1.3e-10 70.1 58 48.3
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 6.7e-10 67.8 127 36.2
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 6.7e-10 67.8 53 47.2
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 8.7e-10 67.4 103 39.8
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 1.1e-09 67.0 43 55.8
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 1.5e-09 66.6 63 46.0
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 2.5e-09 65.9 47 57.4
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 4.3e-09 65.1 92 39.1
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 5.6e-09 64.7 41 58.5
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 7.4e-09 64.3 50 52.0
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 9.6e-09 63.9 41 56.1
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 1.3e-08 63.5 41 56.1
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 1.3e-08 63.5 41 56.1
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 1.3e-08 63.5 41 56.1
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 2.1e-08 62.8 41 56.1
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 2.1e-08 62.8 41 56.1
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 2.1e-08 62.8 41 56.1
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 2.1e-08 62.8 41 56.1
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 2.1e-08 62.8 102 38.2
SGA_v2.0_scaffold36G14535 Striga asiatica HOM05D007757 ORTHO05D009619 3.7e-08 62.0 60 41.7
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 4.8e-08 61.6 41 53.7
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 6.2e-08 61.2 41 53.7
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 6.2e-08 61.2 41 53.7
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 6.2e-08 61.2 41 53.7
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 8.1e-08 60.8 39 51.3
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.1e-07 60.5 40 52.5
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.4e-07 60.1 42 59.5
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.4e-07 60.1 42 59.5
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.4e-07 60.1 58 41.4
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 1.8e-07 59.7 58 41.4
Ciclev10017153m.g Citrus clementina HOM05D007757 ORTHO05D009619 1.8e-07 59.7 123 34.1
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 2.4e-07 59.3 50 46.0
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 2.4e-07 59.3 50 46.0
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 2.4e-07 59.3 50 46.0
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 2.4e-07 59.3 50 46.0
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 2.4e-07 59.3 50 46.0
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 3.1e-07 58.9 40 50.0
Nn3g17848 Nelumbo nucifera HOM05D021434 ORTHO05D009619 5.3e-07 58.2 64 39.1
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 9.0e-07 57.4 111 34.2
Ah.02g127930 Amaranthus hybridus HOM05D007757 ORTHO05D009619 1.5e-06 56.6 72 43.1
AUR62035218 Chenopodium quinoa HOM05D007757 ORTHO05D009619 1.5e-06 56.6 59 45.8
EL10Ac6g14396 Beta vulgaris HOM05D007757 ORTHO05D009619 2.0e-06 56.2 71 38.0
Dinv34824 Davidia involucrata HOM05D021434 ORTHO05D009619 3.4e-06 55.5 115 34.8
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 4.5e-06 55.1 51 43.1


User provided reference genes

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