Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 6.6e-140 500.7 260 100.0
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 8.6e-132 473.8 260 95.4
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 2.5e-131 472.2 260 95.0
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 7.1e-118 427.6 270 85.6
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.3e-116 423.3 270 83.7
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 4.4e-112 408.3 262 83.2
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 2.5e-91 339.3 254 73.2
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 2.1e-90 336.3 257 70.8
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.1e-89 332.4 252 73.4
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 4.0e-89 332.0 220 80.0
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 4.0e-89 332.0 268 67.9
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 1.2e-88 330.5 275 67.6
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 1.2e-88 330.5 270 70.4
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 1.5e-88 330.1 233 75.1
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 3.4e-88 328.9 222 78.4
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 5.8e-88 328.2 235 74.5
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 7.6e-88 327.8 266 69.5
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 7.6e-88 327.8 233 75.1
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 7.6e-88 327.8 207 82.6
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 7.6e-88 327.8 254 70.5
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 9.9e-88 327.4 235 74.9
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 9.9e-88 327.4 278 69.1
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 9.9e-88 327.4 209 84.2
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 9.9e-88 327.4 270 68.9
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.3e-87 327.0 220 78.6
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.3e-87 327.0 220 78.6
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 2.2e-87 326.2 205 82.4
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 2.2e-87 326.2 236 72.5
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.9e-87 325.9 208 84.1
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 4.9e-87 325.1 254 72.8
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 4.9e-87 325.1 265 67.2
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 6.4e-87 324.7 193 85.5
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 8.4e-87 324.3 250 70.0
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 1.1e-86 323.9 238 73.9
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.1e-86 323.9 220 77.7
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 1.4e-86 323.6 217 77.9
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.4e-86 323.6 232 73.3
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.9e-86 323.2 234 76.5
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 2.4e-86 322.8 205 80.5
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 3.2e-86 322.4 277 66.1
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 5.5e-86 321.6 260 68.8
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 5.5e-86 321.6 269 67.7
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 5.5e-86 321.6 249 70.3
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 9.3e-86 320.9 235 72.8
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 1.2e-85 320.5 248 70.6
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 1.6e-85 320.1 249 71.5
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 1.6e-85 320.1 248 71.0
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 3.5e-85 318.9 238 72.7
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 3.5e-85 318.9 268 68.3
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 4.6e-85 318.5 248 70.2
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 6.0e-85 318.2 264 68.2
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 1.0e-84 317.4 270 67.4
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 3.0e-84 315.8 270 65.6
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 5.1e-84 315.1 204 82.4
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 5.1e-84 315.1 195 83.6
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 8.7e-84 314.3 192 82.3
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 8.7e-84 314.3 204 80.4
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 1.1e-83 313.9 204 81.9
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 1.1e-83 313.9 216 77.3
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 1.1e-83 313.9 195 83.6
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 2.5e-83 312.8 270 65.6
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 3.3e-83 312.4 239 72.0
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 3.3e-83 312.4 241 71.0
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 3.3e-83 312.4 260 68.1
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 3.3e-83 312.4 202 80.7
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 5.6e-83 311.6 201 79.1
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 5.6e-83 311.6 191 81.2
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 7.4e-83 311.2 204 77.9
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 7.4e-83 311.2 188 83.5
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 1.3e-82 310.5 274 65.0
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 1.3e-82 310.5 255 65.9
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 1.6e-82 310.1 268 66.0
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 2.1e-82 309.7 263 65.8
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 2.1e-82 309.7 264 64.0
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 2.8e-82 309.3 263 64.6
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 4.8e-82 308.5 269 66.2
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 4.8e-82 308.5 274 64.6
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 4.8e-82 308.5 264 65.9
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 6.2e-82 308.1 270 65.6
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.4e-81 307.0 268 65.3
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 2.4e-81 306.2 198 80.3
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 2.4e-81 306.2 188 82.4
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 4.0e-81 305.4 275 64.7
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 1.5e-80 303.5 269 62.8
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 1.5e-80 303.5 269 64.3
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 2.0e-80 303.1 270 63.3
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 3.4e-80 302.4 218 75.2
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 3.4e-80 302.4 270 64.1
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 3.4e-80 302.4 270 64.1
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 4.5e-80 302.0 271 62.7
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 1.3e-79 300.4 267 63.3
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 8.4e-79 297.7 195 76.9
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 1.4e-78 297.0 248 67.3
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 1.4e-78 297.0 201 75.6
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 5.5e-78 295.0 257 64.6
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 9.3e-78 294.3 264 62.5
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 9.3e-78 294.3 194 76.8
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 4.6e-77 292.0 267 64.0
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 1.1e-73 280.8 237 67.1
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 5.3e-73 278.5 265 62.6
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 6.5e-71 271.6 212 65.6
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 3.0e-68 262.7 196 65.8
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 3.9e-68 262.3 211 69.7
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 4.3e-67 258.8 210 63.8
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 8.2e-66 254.6 233 64.4
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 6.5e-63 245.0 220 59.1
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 9.1e-57 224.6 146 84.2
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 7.2e-54 214.9 201 62.2
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 6.1e-53 211.8 235 54.0
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 7.4e-51 204.9 202 60.4
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 9.7e-51 204.5 221 49.8
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 3.7e-50 202.6 110 90.9
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 7.2e-46 188.3 185 51.4
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 6.1e-45 185.3 208 52.4
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 1.8e-44 183.7 148 67.6
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 4.4e-43 179.1 110 76.4
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 4.2e-38 162.5 213 44.1
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 5.5e-30 135.6 138 62.3
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 3.3e-22 109.8 84 69.0
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.3e-15 87.8 74 67.6
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 2.8e-13 80.1 49 75.5
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.8e-12 77.4 96 55.2
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 1.2e-08 64.7 44 75.0
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 4.6e-08 62.8 44 61.4
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 3.3e-06 56.6 68 55.9


User provided reference genes

Program Settings