Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.1e-156 557.8 630 100.0
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 2.1e-152 543.5 628 98.9
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 2.2e-149 533.5 628 97.9
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.4e-119 433.7 630 88.3
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.4e-116 424.5 630 87.8
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 3.3e-113 413.3 628 89.5
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 1.6e-110 404.4 630 86.8
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 4.3e-52 210.3 630 70.3
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 3.1e-42 177.6 639 67.9
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 2.3e-37 161.4 238 46.2
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 2.3e-37 161.4 639 67.3
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 5.1e-37 160.2 620 64.5
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 6.2e-35 153.3 677 49.6
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 8.1e-35 152.9 637 66.1
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.8e-34 151.8 239 61.5
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 7.6e-33 146.4 238 64.3
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 8.4e-32 142.9 581 69.7
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.4e-31 142.1 620 68.1
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 2.4e-31 141.4 640 67.0
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.7e-30 137.9 598 68.6
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.3e-29 134.8 196 73.5
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 5.6e-28 130.2 605 68.3
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 7.4e-28 129.8 638 65.8
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 7.4e-28 129.8 581 71.9
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 9.6e-28 129.4 240 57.1
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.1e-27 128.3 581 71.8
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 2.4e-26 124.8 237 57.0
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 5.3e-26 123.6 179 77.1
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 5.3e-26 123.6 214 45.8
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 6.9e-26 123.2 638 65.8
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.2e-25 122.5 246 60.6
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 5.8e-25 120.2 133 44.4
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.3e-24 119.0 218 48.6
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.8e-24 117.5 622 52.3
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 8.4e-24 116.3 221 41.6
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 1.1e-23 115.9 199 60.8
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 1.1e-23 115.9 639 59.8
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.4e-23 115.5 229 57.6
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.4e-23 115.5 188 64.9
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 1.9e-23 115.2 207 60.9
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.5e-23 114.8 229 57.6
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 3.2e-23 114.4 218 46.8
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 5.5e-23 113.6 244 54.1
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 7.1e-23 113.2 186 64.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 9.3e-23 112.8 204 34.3
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 9.3e-23 112.8 210 60.0
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 1.2e-22 112.5 206 38.8
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.6e-22 112.1 185 32.4
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.6e-22 112.1 229 57.2
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.7e-22 111.3 186 62.9
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 2.7e-22 111.3 208 61.1
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 3.5e-22 110.9 188 64.4
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 4.6e-22 110.5 205 32.2
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 4.6e-22 110.5 220 57.7
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 6.0e-22 110.2 192 68.8
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 6.0e-22 110.2 604 66.6
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 6.0e-22 110.2 203 44.3
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 6.0e-22 110.2 244 54.5
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 6.0e-22 110.2 105 48.6
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.3e-21 109.0 221 42.1
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.3e-21 109.0 224 56.2
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 1.8e-21 108.6 232 52.6
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 3.9e-21 107.5 241 52.7
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 3.9e-21 107.5 608 59.5
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 5.1e-21 107.1 208 60.1
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 6.7e-21 106.7 245 54.3
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 6.7e-21 106.7 233 30.5
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 8.7e-21 106.3 241 52.7
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 8.7e-21 106.3 241 52.7
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 8.7e-21 106.3 188 62.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.5e-20 105.5 188 34.0
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.9e-20 105.1 223 55.2
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 3.3e-20 104.4 241 52.3
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 3.3e-20 104.4 178 67.4
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 4.3e-20 104.0 221 55.7
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.7e-20 103.6 188 62.8
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.7e-20 103.6 208 59.6
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 5.7e-20 103.6 211 58.3
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 7.4e-20 103.2 96 54.2
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 7.4e-20 103.2 188 41.0
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 9.6e-20 102.8 186 60.8
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 9.6e-20 102.8 78 61.5
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 9.6e-20 102.8 208 59.6
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.3e-19 102.4 206 58.3
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.6e-19 102.1 187 63.1
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.6e-19 102.1 223 54.3
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.6e-19 102.1 198 60.1
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 2.1e-19 101.7 603 66.8
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.8e-19 101.3 223 54.7
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 2.8e-19 101.3 188 59.6
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 6.3e-19 100.1 194 60.3
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 6.3e-19 100.1 194 60.3
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 8.2e-19 99.8 244 50.8
Potri.006G242600 Populus trichocarpa HOM05D003689 ORTHO05D003950 8.2e-19 99.8 152 41.4
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.1e-18 99.4 148 38.5
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.4e-18 99.0 76 57.9
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 2.4e-18 98.2 203 59.1
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 3.1e-18 97.8 187 62.0
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 3.1e-18 97.8 186 57.5
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 4.1e-18 97.4 190 61.1
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 6.9e-18 96.7 194 59.8
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 6.9e-18 96.7 622 64.5
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 1.5e-17 95.5 79 54.4
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.5e-17 95.5 95 50.5
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 1.5e-17 95.5 190 60.5
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 2.0e-17 95.1 184 60.9
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 2.6e-17 94.7 192 61.5
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 2.6e-17 94.7 188 60.6
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 5.9e-17 93.6 200 58.5
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 5.9e-17 93.6 190 59.5
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.0e-16 92.8 79 54.4
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.3e-16 92.4 75 57.3
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 1.3e-16 92.4 75 56.0
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.3e-16 92.4 214 54.2
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 1.7e-16 92.0 75 57.3
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.7e-16 92.0 243 51.9
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 2.2e-16 91.7 75 56.0
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 2.2e-16 91.7 101 48.5
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 2.2e-16 91.7 101 48.5
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 2.2e-16 91.7 75 56.0
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 2.2e-16 91.7 103 46.6
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 2.2e-16 91.7 235 28.5
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 2.9e-16 91.3 70 60.0
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 3.8e-16 90.9 147 36.1
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 3.8e-16 90.9 188 61.2
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 3.8e-16 90.9 115 40.9
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 6.5e-16 90.1 78 55.1
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 8.5e-16 89.7 167 66.5
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.1e-15 89.4 78 53.8
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 1.1e-15 89.4 186 55.9
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.4e-15 89.0 89 50.6
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 1.9e-15 88.6 123 43.9
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 1.9e-15 88.6 116 41.4
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.9e-15 88.6 216 53.7
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 1.9e-15 88.6 167 65.3
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 2.5e-15 88.2 236 52.1
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.2e-15 87.8 190 57.9
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 7.2e-15 86.7 142 37.3
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 1.2e-14 85.9 238 49.6
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 1.2e-14 85.9 141 37.6
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 1.2e-14 85.9 99 43.4
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 1.6e-14 85.5 219 52.5
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 4.6e-14 84.0 185 53.0
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 6.1e-14 83.6 83 45.8
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 6.1e-14 83.6 126 35.7
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 7.9e-14 83.2 186 59.1
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 1.3e-13 82.4 69 55.1
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 1.3e-13 82.4 189 58.2
MD15G1097800 Malus domestica HOM05D003689 ORTHO05D003950 1.8e-13 82.0 121 38.0
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 3.9e-13 80.9 97 44.3
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 3.9e-13 80.9 190 25.3
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 5.1e-13 80.5 165 59.4
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 5.1e-13 80.5 101 40.6
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.5e-12 79.0 78 50.0
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.5e-12 78.2 169 36.7
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.5e-12 78.2 166 62.7
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 4.3e-12 77.4 167 63.5
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 5.7e-12 77.0 224 51.3
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 5.7e-12 77.0 224 51.3
Cpa.g.sc78.81 Carica papaya HOM05D003689 ORTHO05D003950 1.3e-11 75.9 146 37.0
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 1.6e-11 75.5 100 40.0
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 3.7e-11 74.3 167 62.3
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 3.7e-11 74.3 232 49.6
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 3.7e-11 74.3 196 53.1
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 4.8e-11 73.9 78 43.6
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 1.4e-10 72.4 188 56.4
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 1.8e-10 72.0 67 49.3
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 5.3e-10 70.5 71 47.9
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 6.9e-10 70.1 95 42.1
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 9.1e-10 69.7 157 28.0
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.6e-09 68.2 191 52.9
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 2.6e-09 68.2 188 54.8
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 4.5e-09 67.4 191 52.4
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 4.5e-09 67.4 99 39.4
Sabra06G0189700 Salix brachista HOM05D003689 ORTHO05D003950 5.9e-09 67.0 141 33.3
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.7e-08 65.5 191 49.7
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 6.5e-08 63.5 186 51.1
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 1.1e-07 62.8 187 54.5
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 4.2e-07 60.8 55 47.3
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 2.7e-06 58.2 57 42.1


User provided reference genes

Program Settings