Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 1.7e-119 432.6 205 100.0
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 2.8e-109 398.7 205 92.2
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 2.8e-109 398.7 205 92.2
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 6.2e-109 397.5 205 91.2
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 8.3e-106 387.1 203 89.7
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 3.2e-105 385.2 205 88.8
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 1.7e-98 362.8 205 82.4
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 5.6e-78 294.7 202 71.8
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 3.4e-75 285.4 209 68.4
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.3e-74 283.5 209 67.9
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 2.2e-74 282.7 203 68.0
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 2.9e-74 282.3 205 68.3
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 3.8e-74 282.0 202 66.8
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 2.1e-72 276.2 206 66.5
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 2.7e-72 275.8 196 68.9
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 2.3e-71 272.7 198 67.7
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 1.1e-70 270.4 202 66.3
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 2.5e-70 269.2 204 66.2
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 3.3e-70 268.9 199 67.8
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 7.4e-70 267.7 203 66.5
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 7.4e-70 267.7 201 67.2
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.3e-69 266.9 206 65.5
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 2.1e-69 266.2 204 66.2
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 2.8e-69 265.8 212 65.1
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.8e-69 265.8 219 63.9
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 2.8e-69 265.8 203 65.5
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 4.8e-69 265.0 209 65.1
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.8e-68 263.1 219 63.9
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.8e-68 263.1 202 65.3
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 2.4e-68 262.7 195 64.1
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 3.1e-68 262.3 198 65.2
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 3.1e-68 262.3 203 64.5
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 3.1e-68 262.3 208 63.5
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 4.0e-68 261.9 204 62.3
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 6.9e-68 261.2 210 65.2
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 6.9e-68 261.2 207 64.3
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 9.0e-68 260.8 203 64.5
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 9.0e-68 260.8 199 63.3
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 1.5e-67 260.0 203 62.6
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 2.6e-67 259.2 208 64.9
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 2.6e-67 259.2 196 66.8
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 2.6e-67 259.2 203 65.5
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 3.4e-67 258.8 203 62.6
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 3.4e-67 258.8 198 63.6
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 4.5e-67 258.5 205 62.9
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 5.8e-67 258.1 207 63.8
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.0e-66 257.3 203 65.0
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.3e-66 256.9 206 63.1
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 6.5e-66 254.6 211 61.1
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 6.5e-66 254.6 215 61.4
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 1.9e-65 253.1 207 61.4
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 3.2e-65 252.3 190 68.4
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 3.2e-65 252.3 208 60.1
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 4.2e-65 251.9 208 61.5
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 9.3e-65 250.8 208 62.5
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 1.2e-64 250.4 195 62.6
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 1.6e-64 250.0 197 65.0
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 4.6e-64 248.4 201 62.7
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 6.7e-63 244.6 201 61.7
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 1.9e-62 243.0 206 61.2
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 2.5e-62 242.7 202 58.9
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 2.5e-62 242.7 208 59.1
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 7.4e-62 241.1 211 58.3
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 2.1e-61 239.6 197 58.9
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 2.1e-61 239.6 212 59.0
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 3.7e-61 238.8 199 60.3
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 1.1e-60 237.3 200 59.0
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.4e-60 236.9 200 58.5
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 3.1e-60 235.7 212 58.5
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 5.3e-60 235.0 191 60.7
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 1.2e-59 233.8 201 58.7
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 1.2e-59 233.8 208 58.7
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 2.0e-59 233.0 198 57.6
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 2.0e-59 233.0 201 58.7
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.0e-59 233.0 197 59.4
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 2.6e-59 232.6 201 58.2
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 3.4e-59 232.3 204 56.9
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 4.5e-59 231.9 197 57.4
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 5.9e-59 231.5 200 57.5
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 1.3e-58 230.3 204 56.9
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 1.7e-58 229.9 201 57.7
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 1.7e-58 229.9 201 57.7
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 2.2e-58 229.6 202 55.9
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 2.9e-58 229.2 196 59.2
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 3.8e-58 228.8 203 58.1
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 5.0e-58 228.4 197 58.4
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 4.2e-57 225.3 202 58.4
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 9.3e-57 224.2 190 61.1
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.2e-56 223.8 204 59.3
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 3.6e-56 222.2 207 55.6
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.3e-55 220.3 199 54.3
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 1.3e-55 220.3 220 53.6
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 8.7e-55 217.6 162 70.4
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.9e-54 216.5 199 54.8
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 1.9e-54 216.5 203 55.2
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 2.4e-52 209.5 187 58.3
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.9e-50 202.6 173 58.4
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 5.0e-50 201.8 173 60.1
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 2.4e-44 183.0 174 55.2
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 9.1e-44 181.0 153 60.8
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 6.5e-42 174.9 207 47.3
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 2.5e-41 172.9 155 54.8
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.0e-39 167.5 208 45.2
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 3.9e-39 165.6 157 56.7
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 3.9e-39 165.6 117 67.5
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 6.7e-39 164.9 123 67.5
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 2.6e-38 162.9 231 42.4
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 5.7e-38 161.8 157 53.5
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 9.7e-38 161.0 191 46.1
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 2.9e-34 149.4 113 61.1
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.2e-30 137.5 151 47.0
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 4.5e-27 125.6 111 53.2
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 4.0e-23 112.5 122 52.5
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 8.3e-21 104.8 125 45.6
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 7.0e-20 101.7 65 72.3
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 4.5e-19 99.0 125 43.2
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 4.4e-14 82.4 58 70.7
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 1.8e-12 77.0 51 68.6
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 8.6e-10 68.2 149 32.2
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 8.0e-08 61.6 83 42.2
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.8e-07 60.5 68 47.1
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 3.4e-06 56.2 86 33.7


User provided reference genes

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