Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 0.0e+00 1148.7 567 100.0
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 0.0e+00 1080.9 565 94.3
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.6e-254 880.6 460 95.0
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.6e-213 745.7 557 67.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.1e-208 730.3 560 66.4
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.9e-208 729.6 571 66.7
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 9.4e-208 727.2 560 66.1
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.3e-204 716.8 560 65.7
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.1e-203 713.8 571 65.3
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.6e-199 698.7 492 73.2
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.6e-176 621.7 559 57.6
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.6e-175 620.2 553 57.1
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.8e-175 619.4 561 57.0
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.1e-174 615.9 559 57.8
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.4e-171 607.1 561 55.8
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.4e-171 607.1 564 56.0
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.4e-171 606.3 557 56.7
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 6.0e-170 601.7 554 56.3
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 6.6e-169 598.2 559 55.8
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.1e-168 597.4 561 56.0
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 7.3e-168 594.7 566 54.9
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 9.5e-168 594.3 567 55.4
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 2.3e-166 589.7 555 56.4
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 2.0e-165 586.6 567 53.8
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.6e-165 586.3 551 54.6
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 2.6e-165 586.3 570 53.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.7e-164 583.6 555 53.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.9e-164 582.0 534 56.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 8.3e-164 581.3 567 54.0
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.4e-163 580.5 561 54.4
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.4e-163 580.5 514 59.3
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.9e-163 580.1 560 55.4
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 2.4e-163 579.7 566 54.2
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 9.2e-163 577.8 557 54.2
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.1e-162 576.6 581 52.8
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.7e-162 576.2 569 53.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 3.5e-162 575.9 607 51.1
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 7.8e-162 574.7 564 53.4
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.3e-161 573.9 577 53.4
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.0e-161 572.8 550 53.8
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 4.3e-160 568.9 564 53.0
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 9.5e-160 567.8 560 53.2
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.1e-158 564.3 556 52.7
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 4.0e-158 562.4 561 53.5
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 8.9e-158 561.2 556 52.9
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 2.0e-157 560.1 525 55.4
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.6e-157 559.7 557 52.1
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.6e-157 559.7 560 53.6
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.4e-157 559.3 557 52.1
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.8e-157 558.5 554 53.8
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.7e-156 557.0 639 48.4
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.7e-156 555.8 556 52.2
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.9e-156 555.4 564 52.8
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.9e-156 555.4 554 54.0
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 4.9e-156 555.4 563 54.0
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.4e-155 552.0 564 52.1
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.1e-155 551.6 564 52.1
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 2.1e-154 550.1 448 61.6
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.1e-154 550.1 557 51.3
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.7e-154 549.7 545 53.9
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 6.0e-154 548.5 533 55.0
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.7e-153 547.0 562 53.6
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 6.6e-153 545.0 565 51.2
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.3e-152 542.7 562 50.5
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 7.3e-152 541.6 566 50.9
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.2e-151 540.8 569 50.8
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.6e-151 540.4 631 47.9
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.1e-151 540.0 569 50.8
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 6.2e-151 538.5 558 51.1
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 6.2e-151 538.5 564 51.4
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 8.1e-151 538.1 536 52.4
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.1e-150 536.2 555 50.5
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 9.9e-149 531.2 557 50.3
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.9e-148 529.6 566 50.4
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 4.9e-148 528.9 561 50.4
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 3.5e-146 522.7 567 50.8
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.3e-145 520.8 566 49.5
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.9e-144 516.9 565 49.0
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.5e-144 516.5 558 48.7
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.6e-144 514.6 578 49.1
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.3e-143 514.2 563 49.4
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.6e-143 513.8 565 48.3
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.8e-143 513.1 563 49.6
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.1e-142 511.1 558 48.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.8e-142 510.4 568 49.3
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.8e-142 510.4 569 48.0
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.2e-141 507.7 556 48.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 2.6e-141 506.5 567 48.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.8e-140 502.7 572 48.8
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 4.9e-140 502.3 558 48.2
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.9e-139 500.4 587 47.2
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.9e-139 500.4 508 52.6
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.4e-139 500.0 355 65.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.1e-139 498.4 357 64.7
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 9.3e-139 498.0 559 47.2
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 9.3e-139 498.0 357 64.7
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 2.1e-138 496.9 638 46.4
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 4.6e-138 495.7 563 47.4
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.6e-138 495.7 357 64.7
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 6.0e-138 495.4 559 47.0
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.3e-137 494.2 565 46.9
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 4.3e-136 489.2 556 47.5
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.4e-134 484.2 370 61.9
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.2e-133 481.1 529 48.6
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 2.0e-133 480.3 363 62.3
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.7e-132 477.2 357 63.0
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 8.4e-132 474.9 564 47.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.8e-129 467.2 360 61.1
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 3.7e-127 459.5 561 47.2
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.1e-126 458.0 559 44.4
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.9e-126 455.3 556 45.1
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.2e-125 454.5 552 46.9
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 5.8e-125 452.2 388 55.7
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 8.4e-124 448.4 352 60.8
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 5.5e-123 445.7 299 68.2
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 9.3e-123 444.9 565 45.5
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.3e-121 441.0 577 45.2
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.3e-120 436.0 315 63.8
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 3.7e-119 433.0 572 45.3
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.4e-115 421.0 567 41.1
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.4e-115 421.0 575 41.2
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.5e-115 420.2 440 47.7
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 5.5e-115 419.1 567 40.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 9.3e-115 418.3 441 47.8
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 9.3e-115 418.3 441 47.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.2e-114 417.9 563 41.0
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.8e-113 414.1 337 58.8
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.7e-112 409.1 375 50.1
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.2e-111 407.1 375 49.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.8e-111 406.8 589 38.9
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 6.3e-111 405.6 355 52.4
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 2.6e-109 400.2 583 38.9
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 2.6e-109 400.2 583 38.9
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.6e-109 400.2 348 54.0
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.5e-109 399.4 454 46.9
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.0e-108 398.3 321 61.4
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.9e-108 396.7 369 50.7
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.9e-105 386.3 408 49.5
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 5.1e-105 386.0 267 67.0
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 5.1e-105 386.0 587 38.5
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 5.1e-105 386.0 587 38.5
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.4e-102 377.1 451 45.9
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.7e-100 370.9 530 41.3
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.5e-100 369.0 283 58.3
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.4e-99 367.9 299 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 3.9e-97 359.8 525 41.0
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.9e-93 345.9 226 69.0
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.2e-91 340.1 309 54.4
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 6.1e-82 309.3 375 48.5
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.0e-81 307.0 208 68.3
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.3e-79 301.6 208 67.8
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.2e-75 287.0 298 46.0
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 5.4e-62 243.0 330 45.2
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.3e-60 237.7 563 32.3
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 9.5e-59 232.3 321 43.0
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.3e-52 211.1 130 73.8
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.6e-52 209.5 104 94.2
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 5.6e-51 206.5 583 29.8
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 3.7e-47 193.7 166 54.8
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.7e-45 187.6 281 42.7
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 6.6e-44 183.0 125 68.0
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.9e-43 181.4 324 36.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.5e-43 181.0 280 35.4
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 4.4e-40 170.2 144 57.6
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.0e-29 133.3 83 72.3
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.3e-27 126.3 83 71.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 5.3e-25 120.2 101 53.5
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 1.5e-24 118.6 65 83.1
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 4.9e-23 113.6 69 73.9
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.4e-22 112.1 94 56.4
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.4e-15 86.7 258 27.5
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 6.0e-13 80.1 270 31.9
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.1e-12 77.0 132 39.4


User provided reference genes

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