Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 3.9e-102 374.8 185 100.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.0e-98 362.5 185 96.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.6e-92 342.8 185 90.8
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 3.6e-92 341.7 185 90.3
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.4e-80 303.1 183 82.5
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.1e-76 289.3 185 72.4
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-73 279.3 159 88.7
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 4.9e-73 278.1 188 73.9
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.9e-72 276.2 185 71.9
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.7e-71 272.3 188 70.7
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 7.9e-71 270.8 185 69.2
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.8e-70 269.6 185 66.5
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 5.1e-70 268.1 186 72.0
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.7e-70 267.3 185 68.6
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 3.3e-69 265.4 185 67.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.3e-69 265.0 188 69.7
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 6.2e-68 261.2 186 71.0
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 3.1e-67 258.8 190 67.4
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 6.9e-67 257.7 186 68.8
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-66 256.5 181 68.5
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.5e-66 256.5 188 68.6
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 2.0e-66 256.1 182 67.6
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.8e-66 254.6 181 68.0
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 9.9e-66 253.8 181 68.0
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.3e-65 253.4 188 66.5
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.7e-65 253.1 188 68.1
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.4e-64 250.0 193 63.7
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 2.4e-64 249.2 189 68.8
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.2e-64 248.8 150 78.7
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.2e-64 248.8 184 65.8
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.6e-63 246.5 190 64.2
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 3.5e-63 245.4 188 63.8
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 4.6e-63 245.0 191 62.8
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 6.0e-63 244.6 190 64.2
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 6.0e-63 244.6 187 64.2
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.0e-62 243.8 178 65.2
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.3e-62 242.7 173 65.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.3e-62 242.7 189 61.9
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.9e-62 241.9 190 62.6
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.1e-61 240.4 185 64.3
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.5e-61 240.0 225 56.0
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.5e-61 240.0 198 61.6
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.9e-61 239.6 189 63.0
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 4.3e-61 238.4 187 62.6
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 5.6e-61 238.0 196 61.2
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 7.4e-61 237.7 187 64.7
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 9.6e-61 237.3 188 63.3
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.3e-60 236.9 190 63.7
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.3e-60 236.9 185 63.2
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.6e-60 236.5 188 62.8
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.6e-60 236.5 193 62.2
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.7e-60 235.3 186 64.0
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 6.2e-60 234.6 185 64.9
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 8.1e-60 234.2 185 61.1
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 8.1e-60 234.2 196 60.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.4e-59 233.4 185 63.8
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.8e-59 233.0 192 62.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.4e-59 232.6 185 64.3
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 3.1e-59 232.3 185 62.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 3.1e-59 232.3 194 61.9
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 5.3e-59 231.5 149 71.8
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.5e-58 229.9 185 62.7
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.0e-58 229.6 186 60.8
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 2.0e-58 229.6 185 63.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.5e-58 228.4 188 63.3
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 4.5e-58 228.4 186 61.3
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 4.5e-58 228.4 185 61.1
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 4.5e-58 228.4 186 60.2
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.8e-58 228.0 185 63.8
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 7.6e-58 227.6 162 66.7
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 7.6e-58 227.6 185 61.1
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 7.6e-58 227.6 134 77.6
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.0e-57 227.3 180 60.6
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.3e-57 226.9 187 63.1
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-57 226.9 190 61.6
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.3e-57 226.9 185 60.0
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.7e-57 226.5 186 59.7
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.2e-57 226.1 183 61.7
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.2e-57 226.1 185 62.2
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.9e-57 225.7 186 60.8
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 3.8e-57 225.3 193 59.1
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 6.5e-57 224.6 184 60.3
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 6.5e-57 224.6 187 62.6
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.5e-57 224.6 187 62.0
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 8.4e-57 224.2 185 58.9
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 8.4e-57 224.2 184 60.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.1e-56 223.8 157 70.1
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.4e-56 223.4 186 60.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.4e-56 223.4 183 60.1
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.4e-56 223.4 187 62.6
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.4e-56 223.4 185 60.5
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.9e-56 223.0 185 58.9
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.9e-56 223.0 190 61.1
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 2.5e-56 222.6 182 61.5
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.2e-56 222.2 161 67.7
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.2e-56 221.9 190 60.5
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 5.5e-56 221.5 199 57.8
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 7.1e-56 221.1 190 61.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 7.1e-56 221.1 227 54.6
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.5e-55 218.8 177 62.7
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 4.6e-55 218.4 185 60.5
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.0e-54 217.2 186 59.7
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 5.1e-54 214.9 186 57.5
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.1e-53 213.8 130 71.5
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 2.5e-53 212.6 115 82.6
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.5e-53 212.6 251 46.6
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 3.3e-53 212.2 202 55.4
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 5.7e-53 211.5 190 58.4
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 5.7e-53 211.5 147 66.7
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 7.4e-53 211.1 187 57.8
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.1e-51 207.2 139 64.7
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.8e-51 206.5 194 57.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 2.4e-51 206.1 177 57.6
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 4.1e-51 205.3 194 56.2
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 6.9e-51 204.5 185 55.7
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 6.9e-51 204.5 277 43.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 3.4e-50 202.2 167 62.3
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 3.8e-49 198.7 129 70.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 5.0e-49 198.4 185 57.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.9e-48 196.4 160 63.1
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.5e-48 196.1 117 72.6
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.1e-47 193.0 142 63.4
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.0e-46 190.7 130 76.2
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 8.7e-46 187.6 145 61.4
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.7e-39 166.0 87 82.8
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 7.9e-39 164.5 123 58.5
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.4e-38 163.7 125 57.6
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 6.7e-38 161.4 124 60.5
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.9e-34 148.3 111 65.8
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.1e-32 144.1 151 54.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.1e-31 139.8 86 72.1
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 2.0e-29 133.3 137 54.0
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 9.7e-29 131.0 79 69.6
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.1e-27 127.5 158 41.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 2.4e-27 126.3 72 72.2
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 4.1e-27 125.6 72 75.0
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.5e-24 117.1 65 73.8
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.6e-23 112.5 60 85.0
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 5.2e-22 108.6 113 43.4
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.7e-20 103.6 119 52.1
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 8.2e-20 101.3 102 44.1
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 9.8e-13 77.8 98 50.0
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.7e-09 67.0 35 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.5e-08 63.2 58 46.6


User provided reference genes

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