Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 2.5e-94 349.4 270 100.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 4.2e-73 278.9 240 73.3
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.2e-72 277.3 240 72.9
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 5.1e-71 271.9 145 96.6
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 4.5e-67 258.8 144 93.8
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 5.9e-67 258.5 146 92.5
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 2.2e-66 256.5 145 89.0
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 3.8e-58 229.2 133 85.0
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 2.7e-56 223.0 133 82.7
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 2.7e-56 223.0 142 77.5
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 3.6e-56 222.6 136 80.9
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 3.6e-56 222.6 140 77.9
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.6e-56 222.6 137 81.0
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 3.6e-56 222.6 137 81.0
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 8.0e-56 221.5 141 79.4
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 8.0e-56 221.5 135 81.5
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.0e-55 221.1 138 80.4
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 1.8e-55 220.3 140 78.6
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 6.8e-55 218.4 138 79.0
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 8.8e-55 218.0 139 77.7
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 8.8e-55 218.0 142 75.4
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.5e-54 217.2 143 75.5
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.5e-54 217.2 137 77.4
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.5e-54 217.2 138 78.3
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.5e-54 217.2 133 80.5
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.0e-54 216.9 137 78.8
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.0e-54 216.9 141 76.6
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.6e-54 216.5 139 77.0
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 4.4e-54 215.7 144 76.4
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.4e-54 215.7 140 74.3
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.4e-54 215.7 133 79.7
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 5.7e-54 215.3 137 78.8
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 5.7e-54 215.3 134 79.9
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 7.5e-54 214.9 139 75.5
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 9.8e-54 214.5 139 75.5
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 9.8e-54 214.5 143 74.1
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 9.8e-54 214.5 139 76.3
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.3e-53 214.2 142 73.9
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.3e-53 214.2 142 73.9
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 2.2e-53 213.4 139 75.5
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.2e-53 213.4 139 74.8
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.8e-53 213.0 139 77.7
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 3.7e-53 212.6 137 78.1
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 3.7e-53 212.6 138 74.6
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 3.7e-53 212.6 142 73.2
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 4.8e-53 212.2 140 74.3
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 4.8e-53 212.2 139 75.5
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 6.3e-53 211.8 142 73.2
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 6.3e-53 211.8 140 75.7
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 8.3e-53 211.5 137 77.4
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 8.3e-53 211.5 139 74.1
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.1e-52 211.1 143 73.4
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.4e-52 210.7 138 74.6
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.4e-52 210.7 133 76.7
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 1.8e-52 210.3 144 74.3
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.4e-52 209.9 139 74.1
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.4e-52 209.9 137 75.2
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 4.1e-52 209.1 137 76.6
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 4.1e-52 209.1 130 77.7
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 5.4e-52 208.8 137 77.4
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 5.4e-52 208.8 144 72.9
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 9.1e-52 208.0 139 76.3
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 9.1e-52 208.0 138 74.6
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 9.1e-52 208.0 134 76.9
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.2e-51 207.6 139 75.5
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.6e-51 207.2 122 83.6
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 1.6e-51 207.2 140 72.9
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.6e-51 207.2 140 75.0
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.6e-51 207.2 140 74.3
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 2.0e-51 206.8 138 77.5
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 4.5e-51 205.7 139 74.8
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 5.9e-51 205.3 141 73.8
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 1.0e-50 204.5 138 74.6
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.7e-50 203.8 137 76.6
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.7e-50 203.8 133 75.2
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 2.2e-50 203.4 138 76.8
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 3.8e-50 202.6 136 75.0
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 3.8e-50 202.6 137 77.4
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 6.5e-50 201.8 141 70.9
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.1e-49 201.1 130 74.6
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.1e-49 201.1 122 80.3
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 2.5e-49 199.9 137 74.5
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 3.2e-49 199.5 132 74.2
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 5.5e-49 198.7 138 72.5
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 5.5e-49 198.7 139 71.9
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 5.5e-49 198.7 139 74.8
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 7.2e-49 198.4 130 73.1
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 7.2e-49 198.4 138 75.4
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.6e-48 197.2 141 70.2
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.1e-48 196.8 138 71.0
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 2.1e-48 196.8 134 70.1
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.1e-48 196.8 134 70.1
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 2.1e-48 196.8 137 70.8
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 2.7e-48 196.4 130 72.3
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.7e-48 196.4 130 72.3
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.7e-48 196.4 130 72.3
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.7e-48 196.4 130 72.3
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 3.6e-48 196.1 130 72.3
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 3.6e-48 196.1 130 72.3
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 6.1e-48 195.3 131 71.8
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 6.1e-48 195.3 141 71.6
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 6.1e-48 195.3 116 81.9
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 8.0e-48 194.9 131 71.8
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 8.0e-48 194.9 131 71.8
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 8.0e-48 194.9 131 71.8
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.4e-47 194.1 130 71.5
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.4e-47 194.1 133 69.9
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.8e-47 193.7 131 71.0
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.8e-47 193.7 137 70.1
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 3.0e-47 193.0 131 71.0
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 4.0e-47 192.6 116 80.2
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 6.8e-47 191.8 142 69.0
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 2.2e-45 186.8 138 71.7
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 8.3e-45 184.9 139 69.1
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.4e-44 184.1 138 66.7
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 5.4e-44 182.2 130 70.0
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 5.4e-44 182.2 138 65.9
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.3e-42 177.6 133 66.2
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 2.3e-42 176.8 142 66.2
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.3e-42 176.8 142 66.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 5.2e-39 165.6 134 63.4
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.2e-39 165.6 133 63.9
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 2.0e-38 163.7 133 60.2
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.6e-38 163.3 135 62.2
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 1.7e-37 160.6 132 61.4
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.6e-35 154.1 141 58.2
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.4e-31 141.0 122 59.0
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.3e-26 123.6 71 84.5
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 3.3e-25 119.8 75 73.3
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 6.2e-24 115.5 77 76.6
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.3e-23 113.6 142 50.7
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 4.0e-23 112.8 72 73.6
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 5.4e-20 102.4 140 49.3
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.2e-19 101.3 62 75.8
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.2e-19 101.3 62 75.8
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.7e-16 89.4 68 69.1
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 2.0e-14 84.0 72 59.7
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 1.1e-09 68.2 45 73.3


User provided reference genes

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