Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 5.1e-41 170.6 86 100.0
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 2.8e-39 164.9 87 97.7
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 2.8e-39 164.9 87 97.7
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 5.9e-37 157.1 89 91.0
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 9.4e-35 149.8 86 87.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 5.7e-32 140.6 79 89.9
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 7.7e-29 130.2 82 75.6
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.0e-28 129.8 92 73.9
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 4.2e-27 124.4 82 72.0
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 9.4e-27 123.2 82 75.6
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 2.7e-26 121.7 85 70.6
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.7e-26 120.9 82 72.0
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 8.0e-26 120.2 85 70.6
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 8.0e-26 120.2 72 77.8
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.0e-25 118.2 72 76.4
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 7.5e-24 113.6 92 62.0
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.7e-23 112.5 84 67.9
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.7e-23 112.5 81 67.9
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.7e-23 112.5 71 71.8
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.2e-23 112.1 85 62.4
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.8e-23 111.7 82 64.6
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.8e-23 110.9 85 67.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 4.8e-23 110.9 72 68.1
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 6.3e-23 110.5 75 68.0
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 6.3e-23 110.5 75 68.0
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 1.1e-22 109.8 75 68.0
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 1.1e-22 109.8 84 61.9
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 1.1e-22 109.8 83 66.3
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.4e-22 109.4 89 62.9
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.4e-22 109.4 97 59.8
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.8e-22 109.0 85 64.7
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 2.4e-22 108.6 68 72.1
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.4e-22 108.6 69 71.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 3.1e-22 108.2 82 63.4
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 4.1e-22 107.8 85 72.9
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 4.1e-22 107.8 77 64.9
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 7.0e-22 107.1 84 63.1
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.0e-22 107.1 76 64.5
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 7.0e-22 107.1 66 75.8
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 9.1e-22 106.7 79 64.6
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 9.1e-22 106.7 74 66.2
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 9.1e-22 106.7 76 64.5
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.2e-21 106.3 70 68.6
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.2e-21 106.3 83 62.7
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.2e-21 106.3 81 61.7
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 1.6e-21 105.9 69 69.6
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 2.0e-21 105.5 83 66.3
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 2.0e-21 105.5 68 72.1
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 2.7e-21 105.1 82 63.4
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 2.7e-21 105.1 73 67.1
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 2.7e-21 105.1 64 73.4
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 3.5e-21 104.8 84 61.9
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 3.5e-21 104.8 85 64.7
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 4.5e-21 104.4 82 59.8
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 5.9e-21 104.0 68 72.1
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 5.9e-21 104.0 71 69.0
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 5.9e-21 104.0 86 59.3
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 7.7e-21 103.6 70 68.6
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.3e-20 102.8 84 59.5
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 2.2e-20 102.1 82 59.8
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 6.5e-20 100.5 82 63.4
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 8.5e-20 100.1 75 62.7
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.9e-19 99.0 70 68.6
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.9e-19 99.0 82 58.5
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 2.5e-19 98.6 80 62.5
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 2.5e-19 98.6 78 64.1
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 2.5e-19 98.6 80 61.2
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 4.2e-19 97.8 56 76.8
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 4.2e-19 97.8 84 57.1
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 9.4e-19 96.7 61 67.2
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.7e-18 95.1 81 56.8
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 4.7e-18 94.4 57 73.7
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.5e-16 89.4 84 53.6
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.0e-16 89.0 79 57.0
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 5.7e-16 87.4 79 55.7
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 2.8e-15 85.1 82 51.2
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 8.3e-15 83.6 54 63.0
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 8.3e-15 83.6 79 54.4
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.1e-14 83.2 62 58.1
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.1e-14 83.2 67 56.7
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 3.1e-14 81.6 81 49.4
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 5.4e-14 80.9 84 52.4
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 7.0e-14 80.5 69 53.6
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 7.0e-14 80.5 49 65.3
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 7.0e-14 80.5 49 65.3
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.2e-13 79.7 87 49.4
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.0e-13 79.0 66 59.1
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 2.0e-13 79.0 62 56.5
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.0e-13 79.0 81 49.4
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.7e-13 78.6 63 57.1
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.5e-13 78.2 62 58.1
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 5.9e-13 77.4 48 64.6
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 5.9e-13 77.4 48 64.6
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.3e-12 76.3 77 48.1
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 1.3e-12 76.3 43 69.8
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.7e-12 75.9 63 58.7
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 1.7e-12 75.9 49 63.3
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 1.7e-12 75.9 49 63.3
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 1.7e-12 75.9 49 63.3
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.7e-12 75.9 51 66.7
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 3.8e-12 74.7 52 65.4
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 3.8e-12 74.7 46 60.9
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 6.6e-12 73.9 44 68.2
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 6.6e-12 73.9 56 58.9
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.1e-11 73.2 117 36.8
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 1.1e-11 73.2 62 58.1
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.5e-11 72.8 52 63.5
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 1.5e-11 72.8 73 49.3
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 2.5e-11 72.0 56 57.1
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.5e-11 72.0 59 59.3
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 3.3e-11 71.6 70 50.0
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 4.2e-11 71.2 59 59.3
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 4.2e-11 71.2 67 52.2
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 5.5e-11 70.9 39 71.8
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 4.7e-10 67.8 55 52.7
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 6.1e-10 67.4 57 56.1
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.4e-09 66.2 48 62.5
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 3.0e-09 65.1 41 63.4
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 4.0e-09 64.7 59 50.8
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-08 62.0 45 55.6
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 7.5e-08 60.5 80 35.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 9.8e-08 60.1 58 50.0
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.7e-07 58.2 62 41.9
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 1.1e-06 56.6 100 39.0
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 1.1e-06 56.6 40 55.0
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 2.4e-06 55.5 58 50.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 4.1e-06 54.7 44 50.0
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 9.2e-06 53.5 79 36.7


User provided reference genes

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