Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 2.4e-218 761.9 394 100.0
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 6.3e-211 737.3 394 96.7
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 5.2e-205 717.6 394 94.9
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 2.0e-177 625.9 391 85.4
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 2.0e-172 609.4 411 81.3
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 1.2e-169 600.1 360 88.3
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 7.1e-154 547.7 358 81.0
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 9.3e-154 547.4 380 76.6
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 8.7e-152 540.8 369 76.7
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 2.5e-151 539.3 381 76.6
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 1.6e-150 536.6 365 78.4
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 4.0e-149 531.9 378 74.6
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 1.2e-148 530.4 388 73.2
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 2.6e-148 529.3 387 73.6
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 4.5e-148 528.5 364 75.8
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 4.9e-147 525.0 347 79.3
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 8.4e-147 524.2 396 72.0
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.1e-146 523.9 377 74.3
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.1e-146 523.9 378 73.3
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.1e-146 523.9 354 77.1
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 4.2e-146 521.9 382 72.8
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 7.1e-146 521.2 350 78.0
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 9.3e-146 520.8 377 74.0
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 1.2e-145 520.4 406 70.2
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 2.7e-145 519.2 379 72.8
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 2.7e-145 519.2 406 69.7
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 3.5e-145 518.8 367 75.5
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 4.6e-145 518.5 382 72.8
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 7.9e-145 517.7 394 70.6
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.8e-144 516.5 402 69.7
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 3.0e-144 515.8 388 71.4
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 3.9e-144 515.4 345 76.8
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 1.1e-143 513.8 368 73.1
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 1.1e-143 513.8 392 71.4
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 1.1e-143 513.8 373 73.2
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 2.5e-143 512.7 388 70.6
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 2.5e-143 512.7 388 71.9
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 4.3e-143 511.9 383 72.8
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 5.6e-143 511.5 389 70.4
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 7.4e-143 511.1 390 69.5
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 3.7e-142 508.8 375 73.1
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 3.7e-142 508.8 378 71.7
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 3.7e-142 508.8 426 66.4
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 4.8e-142 508.4 362 75.7
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.8e-141 506.5 362 75.7
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 3.1e-141 505.8 405 67.9
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 6.9e-141 504.6 387 69.5
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.5e-140 503.4 350 76.9
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 2.0e-140 503.1 364 72.3
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 2.6e-140 502.7 389 71.7
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 3.4e-140 502.3 351 74.1
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 3.4e-140 502.3 390 68.2
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 4.5e-140 501.9 362 73.2
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 9.9e-140 500.7 385 68.8
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.3e-139 500.4 351 72.9
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 2.2e-139 499.6 386 68.1
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 2.2e-139 499.6 386 68.1
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 2.2e-139 499.6 363 71.6
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 4.9e-139 498.4 379 69.7
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 3.2e-138 495.7 360 74.2
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 4.2e-138 495.4 372 71.8
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 7.1e-138 494.6 385 72.5
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 1.2e-137 493.8 395 67.1
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.6e-137 493.4 384 70.8
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 4.6e-137 491.9 385 69.4
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 7.9e-137 491.1 384 70.6
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.0e-136 489.2 348 74.4
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.0e-136 489.2 348 74.4
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 3.0e-136 489.2 315 79.7
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 6.7e-136 488.0 397 67.5
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 6.7e-136 488.0 343 75.2
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 5.6e-135 485.0 346 72.5
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 1.6e-134 483.4 371 70.6
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 4.8e-134 481.9 343 74.9
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 2.4e-133 479.6 406 66.3
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 1.5e-132 476.9 346 74.0
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 1.7e-131 473.4 371 70.1
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 4.9e-131 471.9 406 66.0
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 6.5e-131 471.5 374 69.0
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 6.0e-129 464.9 396 66.2
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 1.0e-128 464.2 394 65.2
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.0e-128 464.2 308 76.9
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 3.9e-128 462.2 310 78.4
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 5.1e-128 461.8 349 68.5
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 2.4e-125 453.0 425 62.4
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 3.1e-125 452.6 323 71.2
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 6.9e-125 451.4 345 70.1
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.2e-124 450.7 367 67.0
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 8.5e-123 444.5 293 77.1
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 7.2e-122 441.4 390 62.8
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 4.5e-116 422.2 301 74.4
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 1.0e-112 411.0 301 70.8
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 1.0e-107 394.4 319 64.6
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 6.5e-107 391.7 290 69.0
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 2.8e-102 376.3 341 61.3
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 3.1e-93 346.3 239 74.5
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 2.3e-80 303.5 276 63.0
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 6.8e-80 302.0 327 48.9
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 4.4e-79 299.3 313 50.8
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.1e-77 294.7 200 75.5
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.1e-77 294.7 195 75.9
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 9.2e-77 291.6 428 45.1
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 2.9e-75 286.6 318 48.1
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 1.7e-70 270.8 295 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 4.1e-69 266.2 236 56.8
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 2.7e-68 263.5 282 57.8
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 9.5e-66 255.0 262 55.0
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 3.4e-63 246.5 906 27.9
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.6e-60 237.7 157 77.7
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.9e-50 204.1 141 72.3
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 2.4e-45 187.2 157 66.9
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.2e-41 174.9 115 80.9
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 2.3e-35 154.1 124 66.1
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 6.2e-33 146.0 325 32.9
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 2.0e-31 141.0 177 48.0
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 5.3e-24 116.3 82 72.0
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 3.8e-14 83.6 48 85.4
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 4.9e-14 83.2 46 87.0
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 8.4e-14 82.4 77 59.7
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 4.2e-13 80.1 140 33.6
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 5.5e-13 79.7 308 27.6
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 6.0e-12 76.3 49 75.5
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 8.2e-09 65.9 68 54.4


User provided reference genes

Program Settings