Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013863 Solanum tuberosum HOM05D017506 ORTHO05D022179 3.5e-160 568.2 274 100.0
CAN.G1476.10 Capsicum annuum HOM05D017506 ORTHO05D022179 6.0e-51 205.3 205 55.1
CAN.G1402.1 Capsicum annuum HOM05D017506 ORTHO05D022179 7.8e-51 204.9 203 54.2
CAN.G1476.9 Capsicum annuum HOM05D017506 ORTHO05D022179 2.0e-38 163.7 180 51.1
CAN.G2201.1 Capsicum annuum HOM05D017506 ORTHO05D022179 7.6e-30 135.2 205 42.4
CAN.G160.18 Capsicum annuum HOM05D009544 ORTHO05D011564 1.9e-28 130.6 173 44.5
PGSC0003DMG402011202 Solanum tuberosum HOM05D009544 ORTHO05D011564 6.0e-27 125.6 184 42.4
PGSC0003DMG401011202 Solanum tuberosum HOM05D009544 ORTHO05D011564 1.3e-26 124.4 183 41.0
Peaxi162Scf00420g00435 Petunia axillaris HOM05D009544 ORTHO05D011564 4.3e-25 119.4 218 34.4
Peaxi162Scf00347g00324 Petunia axillaris HOM05D009544 ORTHO05D011564 9.7e-25 118.2 175 40.0
Peaxi162Scf00166g00727 Petunia axillaris HOM05D009544 ORTHO05D011564 2.2e-24 117.1 217 34.1
CAN.G1961.1 Capsicum annuum HOM05D009544 ORTHO05D011564 4.8e-24 115.9 172 38.4
CAN.G160.2 Capsicum annuum HOM05D009544 ORTHO05D011564 2.4e-23 113.6 192 37.5
Dinv04924 Davidia involucrata HOM05D000046 ORTHO05D004973 2.6e-22 110.2 201 36.3
SGA_v2.0_scaffold5G02851 Striga asiatica HOM05D017506 ORTHO05D011564 2.6e-22 110.2 176 38.6
Dinv08386 Davidia involucrata HOM05D001277 ORTHO05D004973 7.6e-22 108.6 184 35.9
Dinv04935 Davidia involucrata HOM05D000046 ORTHO05D004973 1.7e-21 107.5 198 36.4
Dinv00588 Davidia involucrata HOM05D000046 ORTHO05D004973 2.2e-21 107.1 211 35.1
CAN.G160.16 Capsicum annuum HOM05D009544 ORTHO05D011564 2.9e-21 106.7 172 37.8
PGSC0003DMG400008419 Solanum tuberosum HOM05D024606 ORTHO05D011564 2.9e-21 106.7 170 34.7
CAN.G160.5 Capsicum annuum HOM05D009544 ORTHO05D011564 3.8e-21 106.3 162 40.7
COL.COLO4_18336 Corchorus olitorius HOM05D000046 ORTHO05D004973 6.5e-21 105.5 211 34.6
Dinv04931 Davidia involucrata HOM05D000046 ORTHO05D004973 1.9e-20 104.0 198 34.8
Dinv19543 Davidia involucrata HOM05D000046 ORTHO05D004973 5.5e-20 102.4 175 35.4
CAN.G1618.13 Capsicum annuum HOM05D009544 ORTHO05D011564 9.3e-20 101.7 204 35.3
CAN.G160.6 Capsicum annuum HOM05D009544 ORTHO05D011564 1.6e-19 100.9 172 38.4
Rhsim09G0138000 Rhododendron simsii HOM05D000046 ORTHO05D004973 2.7e-19 100.1 163 37.4
COL.COLO4_05876 Corchorus olitorius HOM05D000046 ORTHO05D004973 3.0e-18 96.7 180 34.4
Hma1.2p1_1500F.1_g287320 Hydrangea macrophylla HOM05D000046 ORTHO05D004973 3.0e-18 96.7 176 34.1
Hma1.2p1_1718F.1_g299160 Hydrangea macrophylla HOM05D000046 ORTHO05D004973 3.0e-18 96.7 176 34.1
Hma1.2p1_0981F.1_g243650 Hydrangea macrophylla HOM05D000046 ORTHO05D004973 8.8e-18 95.1 139 36.0
COL.COLO4_20415 Corchorus olitorius HOM05D000046 ORTHO05D004973 4.3e-17 92.8 192 30.7
Migut.N01885 Erythranthe guttata HOM05D000046 ORTHO05D004973 5.7e-17 92.4 183 32.8
QL04p092929 Quercus lobata HOM05D000046 ORTHO05D004973 5.7e-17 92.4 184 32.6
CAN.G584.49 Capsicum annuum HOM05D009544 ORTHO05D011564 2.2e-16 90.5 139 40.3
Migut.O00846 Erythranthe guttata HOM05D000046 ORTHO05D004973 2.8e-16 90.1 177 33.3
Migut.M00154 Erythranthe guttata HOM05D000046 ORTHO05D004973 3.7e-16 89.7 202 30.7
Dinv16010 Davidia involucrata HOM05D000046 ORTHO05D004973 4.8e-16 89.4 175 34.9
Dinv17568 Davidia involucrata HOM05D000046 ORTHO05D004973 8.2e-16 88.6 169 36.1
Peaxi162Scf00003g05356 Petunia axillaris HOM05D017506 ORTHO05D022179 1.1e-15 88.2 69 63.8
QL05p045185 Quercus lobata HOM05D000134 ORTHO05D004973 5.3e-15 85.9 165 33.3
QL05p045885 Quercus lobata HOM05D000134 ORTHO05D004973 5.3e-15 85.9 165 33.3
COL.COLO4_32313 Corchorus olitorius HOM05D000046 ORTHO05D004973 2.0e-14 84.0 160 35.0
Migut.N01923 Erythranthe guttata HOM05D000046 ORTHO05D004973 3.4e-14 83.2 178 29.8
Migut.O00925 Erythranthe guttata HOM05D000046 ORTHO05D004973 4.5e-14 82.8 180 30.6
SGA_v2.0_scaffold5G02843 Striga asiatica HOM05D065191 ORTHO05D011564 4.5e-14 82.8 132 36.4
Lj2A703T54 Lonicera japonica HOM05D000046 ORTHO05D004973 5.9e-14 82.4 183 32.8
Lj2A707T13 Lonicera japonica HOM05D000046 ORTHO05D004973 5.9e-14 82.4 183 32.8
Lj3A585G41 Lonicera japonica HOM05D000046 ORTHO05D004973 7.7e-14 82.0 183 32.2
QL03p027553 Quercus lobata HOM05D000046 ORTHO05D004973 7.7e-14 82.0 177 33.3
PGR142G1886 Punica granatum HOM05D000046 ORTHO05D004973 1.0e-13 81.6 180 30.6
QL05p060683 Quercus lobata HOM05D000134 ORTHO05D004973 1.0e-13 81.6 167 32.9
DCAR_010241 Daucus carota HOM05D000046 ORTHO05D004973 3.8e-13 79.7 167 32.3
Migut.O00429 Erythranthe guttata HOM05D000046 ORTHO05D004973 3.8e-13 79.7 179 28.5
QL05p048966 Quercus lobata HOM05D000046 ORTHO05D004973 3.8e-13 79.7 147 33.3
QL04p090644 Quercus lobata HOM05D000085 ORTHO05D004973 1.1e-12 78.2 191 30.9
Lj3A586G10 Lonicera japonica HOM05D000046 ORTHO05D004973 2.5e-12 77.0 183 31.1
Migut.N01890 Erythranthe guttata HOM05D000046 ORTHO05D004973 5.5e-12 75.9 179 26.8
FvH4_4g23630 Fragaria vesca HOM05D000046 ORTHO05D004973 5.5e-12 75.9 168 33.3
FAN12G1200 Fragaria x ananassa HOM05D000046 ORTHO05D004973 5.5e-12 75.9 168 33.3
Migut.N01894 Erythranthe guttata HOM05D000046 ORTHO05D004973 9.4e-12 75.1 177 31.6
Migut.N01896 Erythranthe guttata HOM05D000134 ORTHO05D004973 9.4e-12 75.1 178 28.7
PGR042G2259 Punica granatum HOM05D000046 ORTHO05D004973 9.4e-12 75.1 176 28.4
Migut.N01886 Erythranthe guttata HOM05D000046 ORTHO05D004973 1.6e-11 74.3 178 28.7
FAN07G0274 Fragaria x ananassa HOM05D000046 ORTHO05D004973 3.6e-11 73.2 173 32.4
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 6.1e-11 72.4 70 55.7
Lju414C5G9 Lonicera japonica HOM05D000046 ORTHO05D004973 6.1e-11 72.4 166 31.3
RhsimUnG0166500 Rhododendron simsii HOM05D000046 ORTHO05D018099 6.1e-11 72.4 166 33.1
Peaxi162Scf00299g00044 Petunia axillaris HOM05D000046 ORTHO05D004973 1.0e-10 71.6 144 35.4
Migut.M00173 Erythranthe guttata HOM05D000046 ORTHO05D004973 1.8e-10 70.9 192 29.7
PGR042G0885 Punica granatum HOM05D000134 ORTHO05D004973 2.3e-10 70.5 178 27.5
QL07p011930 Quercus lobata HOM05D000134 ORTHO05D004973 2.3e-10 70.5 139 33.1
FAN17G1565 Fragaria x ananassa HOM05D000046 ORTHO05D004973 5.1e-10 69.3 168 31.5
ECA240G0434 Erigeron canadensis HOM05D000038 ORTHO05D000143 8.8e-10 68.6 195 32.3
Solyc01g106870.4 Solanum lycopersicum HOM05D000046 ORTHO05D004973 1.1e-09 68.2 166 29.5
Nitab4.5_0002756g0050 Nicotiana tabacum HOM05D000094 ORTHO05D003883 2.6e-09 67.0 216 26.9
Sopen01g049150 Solanum pennellii HOM05D000046 ORTHO05D004973 3.3e-09 66.6 166 27.7
Manes.03G011200 Manihot esculenta HOM05D000134 ORTHO05D002396 4.4e-09 66.2 179 27.9
Solyc03g115610.3 Solanum lycopersicum HOM05D000094 ORTHO05D003883 4.4e-09 66.2 211 27.5
PGSC0003DMG400024661 Solanum tuberosum HOM05D000094 ORTHO05D003883 4.4e-09 66.2 211 27.5
Lsat_1_v5_gn_1_30941 Lactuca sativa HOM05D001649 ORTHO05D007966 5.7e-09 65.9 168 32.1
Sopen03g034600 Solanum pennellii HOM05D000094 ORTHO05D003883 5.7e-09 65.9 211 27.5
Cfa011165 Carpinus fangiana HOM05D000046 ORTHO05D004973 9.7e-09 65.1 168 28.6
Hma1.2p1_0329F.1_g127120 Hydrangea macrophylla HOM05D001649 ORTHO05D007966 9.7e-09 65.1 195 30.3
Nitab4.5_0001211g0100 Nicotiana tabacum HOM05D000094 ORTHO05D003883 9.7e-09 65.1 212 27.8
Dinv19538 Davidia involucrata HOM05D015775 ORTHO05D004973 1.3e-08 64.7 106 35.8
CAN.G479.47 Capsicum annuum HOM05D000094 ORTHO05D003883 1.7e-08 64.3 211 27.0
DCAR_028775 Daucus carota HOM05D000038 ORTHO05D000612 2.2e-08 63.9 179 32.4
Migut.N01892 Erythranthe guttata HOM05D000046 ORTHO05D004973 2.2e-08 63.9 106 34.9
Rhsim12G0115000 Rhododendron simsii HOM05D000046 ORTHO05D018099 2.2e-08 63.9 166 31.3
Eucgr.A00887 Eucalyptus grandis HOM05D000166 ORTHO05D000812 2.8e-08 63.5 188 29.8
CDE04G2889 Ceratophyllum demersum HOM05D000166 ORTHO05D000812 3.7e-08 63.2 178 33.1
CsaV3_7G007210 Cucumis sativus L. HOM05D000026 ORTHO05D000127 3.7e-08 63.2 179 29.6
Lsat_1_v5_gn_3_109201 Lactuca sativa HOM05D000041 ORTHO05D000452 3.7e-08 63.2 178 25.3
DCAR_028774 Daucus carota HOM05D000038 ORTHO05D000612 4.8e-08 62.8 178 31.5
ECA246G1384 Erigeron canadensis HOM05D000041 ORTHO05D000452 4.8e-08 62.8 170 30.6
PGSC0003DMG400005129 Solanum tuberosum HOM05D000046 ORTHO05D004973 4.8e-08 62.8 104 34.6
Cc02_g29390 Coffea canephora HOM05D000237 ORTHO05D001145 6.3e-08 62.4 172 29.1
COL.COLO4_32314 Corchorus olitorius HOM05D000046 ORTHO05D004973 6.3e-08 62.4 161 30.4
vmacro07032 Vaccinium macrocarpon HOM05D030287 ORTHO05D018099 6.3e-08 62.4 185 29.7
Migut.N01887 Erythranthe guttata HOM05D000046 ORTHO05D004973 8.2e-08 62.0 105 35.2
Lsat_1_v5_gn_1_86101 Lactuca sativa HOM05D000041 ORTHO05D000012 8.2e-08 62.0 179 26.3
Oeu023426.1 Olea europaea HOM05D000046 ORTHO05D000168 8.2e-08 62.0 202 27.7
SEGI_28174 Sequoiadendron giganteum HOM05D000046 ORTHO05D000457 8.2e-08 62.0 205 29.8
Duzib150G1643 Durio zibethinus HOM05D000134 ORTHO05D002396 1.1e-07 61.6 239 28.0
Hma1.2p1_0329F.1_g127130 Hydrangea macrophylla HOM05D001649 ORTHO05D007966 1.1e-07 61.6 185 29.7
Phvul.009G130300 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 1.1e-07 61.6 191 26.7
Cpa.g.sc56.43 Carica papaya HOM05D000038 ORTHO05D000612 1.4e-07 61.2 173 30.6
PGR042G2007 Punica granatum HOM05D000054 ORTHO05D002559 1.4e-07 61.2 174 31.6
Migut.F02083 Erythranthe guttata HOM05D000166 ORTHO05D000812 1.8e-07 60.8 175 31.4
Lalb_Chr09g0335001 Lupinus albus HOM05D000085 ORTHO05D000274 1.8e-07 60.8 188 27.1
Psat2g104160 Pisum sativum HOM05D000085 ORTHO05D000274 1.8e-07 60.8 204 27.9
Oeu034719.1 Olea europaea HOM05D000166 ORTHO05D000812 2.4e-07 60.5 188 29.3
Phvul.006G133200 Phaseolus vulgaris HOM05D000166 ORTHO05D000812 2.4e-07 60.5 181 30.9
Actinidia15500 Actinidia chinensis HOM05D000046 ORTHO05D000195 3.1e-07 60.1 188 27.1
Lsat_1_v5_gn_5_50580 Lactuca sativa HOM05D000041 ORTHO05D000452 3.1e-07 60.1 170 25.9
Eucgr.F03967 Eucalyptus grandis HOM05D001649 ORTHO05D007966 4.1e-07 59.7 191 28.8
Lalb_Chr14g0371021 Lupinus albus HOM05D000260 ORTHO05D000318 4.1e-07 59.7 219 26.0
Aa31LG1G17960 Aethionema arabicum HOM05D000237 ORTHO05D001145 5.3e-07 59.3 169 30.8
Ah.04g165700 Amaranthus hybridus HOM05D000134 ORTHO05D000168 5.3e-07 59.3 194 31.4
DCAR_028074 Daucus carota HOM05D000038 ORTHO05D000612 5.3e-07 59.3 170 31.2
ECA248G0337 Erigeron canadensis HOM05D000026 ORTHO05D000094 5.3e-07 59.3 176 30.1
CSS0017791 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D000274 6.9e-07 58.9 179 29.6
CSS0039082 Camellia sinensis var. sinensis HOM05D000166 ORTHO05D000812 6.9e-07 58.9 174 29.3
AUR62032501 Chenopodium quinoa HOM05D000166 ORTHO05D000812 6.9e-07 58.9 190 27.9
HanXRQChr13g0406891 Helianthus annuus HOM05D000026 ORTHO05D000094 6.9e-07 58.9 173 28.9
Hund15702 Selenicereus undatus HOM05D000166 ORTHO05D000812 6.9e-07 58.9 193 28.0
Sc04g0008940 Simmondsia chinensis HOM05D000134 ORTHO05D007593 6.9e-07 58.9 160 31.2
CiPaw.07G210200 Carya illinoinensis HOM05D000166 ORTHO05D000812 9.1e-07 58.5 176 31.2
Gohir.D13G072300 Gossypium hirsutum HOM05D000046 ORTHO05D011617 9.1e-07 58.5 174 28.7
HanXRQChr01g0020461 Helianthus annuus HOM05D000166 ORTHO05D000812 9.1e-07 58.5 188 29.8
Psat5g041320 Pisum sativum HOM05D000038 ORTHO05D000612 9.1e-07 58.5 181 27.6
Sed0028083 Sechium edule HOM05D000026 ORTHO05D000127 9.1e-07 58.5 179 27.9
TAR636G2238 Trochodendron aralioides HOM05D001649 ORTHO05D007966 9.1e-07 58.5 183 28.4
Aqoxy2G03885 Aquilegia oxysepala HOM05D000085 ORTHO05D001756 1.2e-06 58.2 175 31.4
Ciclev10013547m.g Citrus clementina HOM05D000038 ORTHO05D000612 1.2e-06 58.2 178 30.3
Migut.O00591 Erythranthe guttata HOM05D000046 ORTHO05D004973 1.2e-06 58.2 105 33.3
Gorai.013G083000 Gossypium raimondii HOM05D000046 ORTHO05D011617 1.2e-06 58.2 174 28.7
Hma1.2p1_0240F.1_g100210 Hydrangea macrophylla HOM05D000038 ORTHO05D000612 1.2e-06 58.2 181 27.1
Pp3c2_18900 Physcomitrium patens HOM05D000085 ORTHO05D001460 1.2e-06 58.2 181 29.3
QL05p083638 Quercus lobata HOM05D000166 ORTHO05D000812 1.2e-06 58.2 175 30.3
QL93p2008_0048 Quercus lobata HOM05D000166 ORTHO05D000812 1.2e-06 58.2 175 30.3
Glyma.07G270700 Glycine max HOM05D000166 ORTHO05D000812 1.5e-06 57.8 169 28.4
Medtr5g034210 Medicago truncatula HOM05D000085 ORTHO05D000274 1.5e-06 57.8 193 26.9
Phvul.006G150900 Phaseolus vulgaris HOM05D000134 ORTHO05D000168 1.5e-06 57.8 177 30.5
QL10p065521 Quercus lobata HOM05D000166 ORTHO05D000812 1.5e-06 57.8 180 30.6
vmacro19813 Vaccinium macrocarpon HOM05D000166 ORTHO05D000812 1.5e-06 57.8 178 30.3
Ca_03153_v3 Cicer arietinum L. HOM05D000085 ORTHO05D000274 2.0e-06 57.4 193 26.9
Glyma.07G183900 Glycine max HOM05D000026 ORTHO05D000127 2.0e-06 57.4 174 30.5
Haze_10467 Corylus avellana HOM05D000026 ORTHO05D000127 2.6e-06 57.0 168 28.6
ECA236G2439 Erigeron canadensis HOM05D000166 ORTHO05D000812 2.6e-06 57.0 189 30.7
HanXRQChr04g0119621 Helianthus annuus HOM05D000166 ORTHO05D000812 2.6e-06 57.0 189 30.7
Lj2g0022526 Lotus japonicus HOM05D000085 ORTHO05D000274 2.6e-06 57.0 206 26.2
MD15G1053200 Malus domestica HOM05D000026 ORTHO05D000127 2.6e-06 57.0 179 27.9
Os02g0118200 Oryza sativa ssp. japonica HOM05D000046 ORTHO05D000195 2.6e-06 57.0 191 27.7
PGR042G2335 Punica granatum HOM05D009544 ORTHO05D004973 2.6e-06 57.0 86 36.0
PGR083G2857 Punica granatum HOM05D000038 ORTHO05D000612 2.6e-06 57.0 175 29.1
PGSC0003DMG400011848 Solanum tuberosum HOM05D009544 ORTHO05D011564 2.6e-06 57.0 72 43.1
ATR0723G026 Amborella trichopoda HOM05D000085 ORTHO05D001460 3.4e-06 56.6 168 28.0
CDE12G0942 Ceratophyllum demersum HOM05D000166 ORTHO05D000812 3.4e-06 56.6 180 31.1
Glyma.02G035300 Glycine max HOM05D000085 ORTHO05D000274 3.4e-06 56.6 188 27.7
Psat4g124200 Pisum sativum HOM05D000085 ORTHO05D000274 3.4e-06 56.6 188 27.1
HPP92_016604 Vanilla planifolia HOM05D000046 ORTHO05D000457 3.4e-06 56.6 165 30.9
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 4.5e-06 56.2 174 28.2
CiPaw.05G000300 Carya illinoinensis HOM05D000166 ORTHO05D000812 4.5e-06 56.2 176 29.5
Lsat_1_v5_gn_8_27040 Lactuca sativa HOM05D000041 ORTHO05D000452 4.5e-06 56.2 179 27.4
Lalb_Chr03g0033661 Lupinus albus HOM05D000134 ORTHO05D000168 4.5e-06 56.2 177 28.8
TAR629G2700 Trochodendron aralioides HOM05D000085 ORTHO05D000274 4.5e-06 56.2 178 28.7
FAN14G0816 Fragaria x ananassa HOM05D000134 ORTHO05D002396 5.9e-06 55.8 191 27.7
PSO135G0294 Papaver somniferum HOM05D000046 ORTHO05D000457 5.9e-06 55.8 169 33.1
Peaxi162Scf00220g00239 Petunia axillaris HOM05D000085 ORTHO05D006184 5.9e-06 55.8 177 28.2
SEGI_21474 Sequoiadendron giganteum HOM05D000166 ORTHO05D000812 5.9e-06 55.8 207 27.1
Duzib138G1416 Durio zibethinus HOM05D000085 ORTHO05D001460 7.7e-06 55.5 177 27.7
ECA238G2432 Erigeron canadensis HOM05D000085 ORTHO05D001756 7.7e-06 55.5 175 28.6
Hma1.2p1_0085F.1_g044810 Hydrangea macrophylla HOM05D000046 ORTHO05D000195 7.7e-06 55.5 181 26.5
PSO724G1198 Papaver somniferum HOM05D000046 ORTHO05D000457 7.7e-06 55.5 169 32.5
Phvul.002G070900 Phaseolus vulgaris HOM05D000085 ORTHO05D000274 7.7e-06 55.5 193 25.9
Pp3c10_1370 Physcomitrium patens HOM05D000085 ORTHO05D001460 7.7e-06 55.5 180 29.4


User provided reference genes

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