Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 1.0e-114 416.8 209 100.0
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 3.1e-100 368.6 209 90.9
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 1.2e-99 366.7 208 90.4
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 9.9e-30 134.4 192 47.4
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 2.1e-24 116.7 303 37.6
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.9e-20 103.6 117 59.8
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 6.7e-18 95.1 146 41.8
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 9.6e-17 91.3 149 43.6
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.2e-13 80.1 170 35.9
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 3.8e-13 79.3 96 44.8
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 3.8e-13 79.3 108 45.4
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 5.0e-13 79.0 124 42.7
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 8.4e-13 78.2 71 59.2
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 1.1e-12 77.8 97 44.3
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 3.2e-12 76.3 90 50.0
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 3.2e-12 76.3 94 46.8
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 9.3e-12 74.7 104 42.3
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 9.3e-12 74.7 98 44.9
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 9.3e-12 74.7 94 46.8
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 1.2e-11 74.3 78 60.3
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 1.2e-11 74.3 81 53.1
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.2e-11 74.3 110 43.6
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 2.7e-11 73.2 73 54.8
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 2.7e-11 73.2 122 38.5
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 2.7e-11 73.2 106 42.5
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 6.1e-11 72.0 76 57.9
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 7.9e-11 71.6 115 44.3
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.0e-10 71.2 92 46.7
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 1.3e-10 70.9 88 50.0
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 1.3e-10 70.9 113 41.6
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 1.3e-10 70.9 93 44.1
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 1.8e-10 70.5 71 53.5
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 1.8e-10 70.5 94 42.6
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 2.3e-10 70.1 73 57.5
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 5.1e-10 68.9 86 46.5
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 6.7e-10 68.6 80 52.5
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 6.7e-10 68.6 60 61.7
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 6.7e-10 68.6 95 43.2
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 6.7e-10 68.6 106 43.4
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 1.5e-09 67.4 68 52.9
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 1.5e-09 67.4 68 52.9
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 1.5e-09 67.4 68 52.9
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 1.5e-09 67.4 60 60.0
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.5e-09 67.4 90 51.1
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.9e-09 67.0 73 57.5
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 1.9e-09 67.0 73 57.5
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 1.9e-09 67.0 100 41.0
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 1.9e-09 67.0 103 39.8
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 2.5e-09 66.6 56 60.7
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 2.5e-09 66.6 84 44.0
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 2.5e-09 66.6 89 42.7
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 3.3e-09 66.2 115 40.0
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 5.7e-09 65.5 79 51.9
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 7.4e-09 65.1 82 51.2
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 7.4e-09 65.1 80 50.0
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 9.7e-09 64.7 92 45.7
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 9.7e-09 64.7 100 42.0
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 1.3e-08 64.3 60 56.7
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.3e-08 64.3 96 44.8
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 1.3e-08 64.3 76 47.4
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 1.3e-08 64.3 83 48.2
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 1.6e-08 63.9 101 40.6
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 3.7e-08 62.8 70 52.9
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 3.7e-08 62.8 116 39.7
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 3.7e-08 62.8 60 55.0
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 4.8e-08 62.4 115 38.3
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 6.3e-08 62.0 68 52.9
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 6.3e-08 62.0 68 52.9
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 6.3e-08 62.0 72 51.4
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.1e-07 61.2 58 55.2
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.8e-07 60.5 67 55.2
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.8e-07 60.5 67 50.7
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 1.8e-07 60.5 107 36.4
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.4e-07 60.1 89 40.4
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 3.1e-07 59.7 100 38.0
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 4.1e-07 59.3 119 36.1
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 4.1e-07 59.3 83 48.2
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 5.3e-07 58.9 109 31.2
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 5.3e-07 58.9 70 48.6
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 5.3e-07 58.9 120 32.5
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 6.9e-07 58.5 116 37.1
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 6.9e-07 58.5 68 51.5
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 2.6e-06 56.6 109 38.5
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 2.6e-06 56.6 59 49.2
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 5.9e-06 55.5 108 41.7
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 7.7e-06 55.1 92 40.2


User provided reference genes

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