Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 2.8e-46 188.3 101 100.0
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 2.1e-38 162.2 101 91.1
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 6.3e-38 160.6 101 90.1
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 1.2e-33 146.4 101 82.2
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.0e-32 141.7 101 78.2
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.5e-31 139.4 101 77.2
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 2.0e-28 129.0 103 71.8
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.9e-27 125.2 100 68.0
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.4e-26 122.9 101 68.3
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 1.6e-25 119.4 108 64.8
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 3.0e-24 115.2 104 64.4
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 1.3e-22 109.8 107 57.9
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 4.8e-22 107.8 100 59.0
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 1.1e-21 106.7 109 59.6
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 4.1e-21 104.8 100 62.0
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 3.4e-20 101.7 100 54.0
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 5.9e-20 100.9 110 54.5
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 1.1e-18 96.7 100 56.0
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.9e-18 95.9 100 54.0
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 4.2e-18 94.7 100 52.0
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 7.2e-18 94.0 95 61.1
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 2.1e-17 92.4 101 54.5
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 3.6e-17 91.7 100 55.0
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 6.1e-17 90.9 100 54.0
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.0e-16 90.1 100 51.0
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 1.0e-16 90.1 100 52.0
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 2.3e-16 89.0 100 52.0
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 3.0e-16 88.6 103 54.4
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 3.9e-16 88.2 65 70.8
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 5.1e-16 87.8 57 73.7
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 6.7e-16 87.4 101 54.5
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 6.7e-16 87.4 100 54.0
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 1.1e-15 86.7 100 55.0
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 1.5e-15 86.3 62 67.7
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.5e-15 86.3 65 66.2
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 2.0e-15 85.9 97 51.5
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 2.6e-15 85.5 105 51.4
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 2.6e-15 85.5 105 50.5
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 2.6e-15 85.5 102 49.0
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 9.7e-15 83.6 56 69.6
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 9.7e-15 83.6 77 58.4
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 9.7e-15 83.6 100 49.0
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 2.2e-14 82.4 100 50.0
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 2.2e-14 82.4 57 68.4
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 2.8e-14 82.0 78 57.7
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 3.7e-14 81.6 107 49.5
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 3.7e-14 81.6 100 44.0
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 4.8e-14 81.3 101 51.5
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 4.8e-14 81.3 100 47.0
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 6.3e-14 80.9 100 46.0
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 6.3e-14 80.9 102 45.1
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 6.3e-14 80.9 104 50.0
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 6.3e-14 80.9 65 60.0
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 1.1e-13 80.1 101 50.5
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.1e-13 80.1 100 44.0
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.4e-13 79.7 53 69.8
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 1.8e-13 79.3 102 44.1
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 1.8e-13 79.3 55 69.1
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.1e-13 78.2 104 46.2
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.1e-13 78.2 104 46.2
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 7.0e-13 77.4 100 44.0
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 7.0e-13 77.4 100 44.0
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 9.1e-13 77.0 100 47.0
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 9.1e-13 77.0 107 47.7
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.2e-12 76.6 70 55.7
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.2e-12 76.6 107 45.8
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.2e-12 76.6 107 45.8
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 1.2e-12 76.6 61 60.7
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.6e-12 76.3 100 44.0
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 2.0e-12 75.9 53 66.0
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 2.0e-12 75.9 53 66.0
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.0e-12 75.9 53 67.9
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.5e-12 74.7 103 42.7
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 4.5e-12 74.7 44 75.0
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 5.9e-12 74.3 77 48.1
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 7.7e-12 73.9 51 68.6
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 1.0e-11 73.6 57 63.2
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 1.0e-11 73.6 57 63.2
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 1.0e-11 73.6 101 49.5
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 2.2e-11 72.4 57 61.4
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 2.2e-11 72.4 57 61.4
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 5.0e-11 71.2 101 43.6
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 5.0e-11 71.2 83 48.2
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 1.1e-10 70.1 105 42.9
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 1.9e-10 69.3 45 66.7
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 5.5e-10 67.8 110 42.7
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 7.2e-10 67.4 51 66.7
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 7.2e-10 67.4 42 71.4
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 9.4e-10 67.0 41 73.2
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 1.6e-09 66.2 85 43.5
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 6.1e-09 64.3 80 50.0
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 5.2e-08 61.2 102 40.2
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.2e-06 55.8 103 37.9


User provided reference genes

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