Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 1.2e-129 466.5 235 100.0
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 4.4e-127 458.0 235 97.4
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 2.2e-126 455.7 235 96.6
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.7e-116 422.2 225 92.9
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 5.1e-115 417.9 235 91.1
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 5.8e-111 404.4 226 89.4
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 5.4e-109 397.9 225 86.2
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.1e-108 396.0 225 84.9
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 6.0e-108 394.4 225 84.9
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.0e-107 393.7 225 84.4
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 1.3e-107 393.3 225 84.9
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 2.3e-107 392.5 222 85.6
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 2.3e-107 392.5 225 84.9
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.1e-107 391.3 233 82.4
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.1e-107 391.3 225 84.4
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 8.6e-107 390.6 224 83.0
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.9e-106 389.4 226 83.2
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 3.3e-106 388.7 222 83.3
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 9.6e-106 387.1 225 84.0
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 9.6e-106 387.1 225 84.0
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 1.6e-105 386.3 221 86.0
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.1e-105 386.0 224 83.0
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 2.1e-105 386.0 234 79.9
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 2.1e-105 386.0 222 82.9
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 2.8e-105 385.6 224 81.2
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 3.6e-105 385.2 225 82.7
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 4.7e-105 384.8 225 81.3
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 6.2e-105 384.4 225 83.1
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 6.2e-105 384.4 225 81.3
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 8.1e-105 384.0 235 79.6
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 8.1e-105 384.0 224 81.2
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 8.1e-105 384.0 224 81.2
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 1.1e-104 383.6 222 82.9
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.4e-104 383.3 224 81.7
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.4e-104 383.3 224 81.7
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 1.4e-104 383.3 225 81.8
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 1.4e-104 383.3 225 82.7
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 1.4e-104 383.3 226 81.4
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 2.4e-104 382.5 240 78.3
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.4e-104 382.5 225 82.7
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 3.1e-104 382.1 225 82.2
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 3.1e-104 382.1 224 81.7
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.1e-104 382.1 224 81.7
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 3.1e-104 382.1 225 80.0
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 4.0e-104 381.7 225 82.7
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.9e-104 380.6 224 81.2
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.9e-104 380.6 224 80.8
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 8.9e-104 380.6 235 78.7
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 1.5e-103 379.8 222 82.4
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 3.4e-103 378.6 225 82.2
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 7.6e-103 377.5 225 82.2
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 7.6e-103 377.5 225 82.2
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 9.9e-103 377.1 225 80.0
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 6.4e-102 374.4 225 81.3
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 8.4e-102 374.0 224 80.8
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 8.4e-102 374.0 228 81.1
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.4e-101 373.2 221 80.1
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 1.4e-101 373.2 225 80.0
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.4e-101 372.5 228 79.4
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 2.4e-101 372.5 225 80.9
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 3.2e-101 372.1 226 79.2
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 5.4e-101 371.3 237 78.1
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 7.1e-101 370.9 226 79.2
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 2.1e-100 369.4 236 78.4
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 2.7e-100 369.0 225 80.4
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 2.7e-100 369.0 224 79.5
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.5e-100 368.6 220 80.9
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 6.0e-100 367.9 224 79.0
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 1.0e-99 367.1 236 74.6
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.0e-99 367.1 225 83.6
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.7e-99 366.3 226 80.5
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.3e-99 365.9 240 75.4
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 3.0e-99 365.5 226 80.1
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 3.0e-99 365.5 235 75.3
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 1.1e-98 363.6 234 74.8
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 4.3e-98 361.7 225 77.8
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 3.6e-97 358.6 224 75.9
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 3.6e-97 358.6 224 75.9
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 3.6e-97 358.6 219 76.3
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 4.8e-97 358.2 218 78.4
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 6.2e-97 357.8 224 76.3
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 8.1e-97 357.5 214 80.8
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 1.4e-96 356.7 224 76.8
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 1.8e-96 356.3 222 75.7
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 4.0e-96 355.1 224 76.8
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 4.0e-96 355.1 225 75.6
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 4.0e-96 355.1 224 75.4
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 5.3e-96 354.8 225 78.7
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 9.0e-96 354.0 225 75.1
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 9.0e-96 354.0 224 76.3
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 9.0e-96 354.0 228 76.8
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 1.2e-95 353.6 237 73.4
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.2e-95 353.6 218 79.8
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 1.5e-95 353.2 224 75.4
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 3.4e-95 352.1 224 73.7
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 3.4e-95 352.1 224 75.9
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.4e-95 352.1 225 75.1
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 5.8e-95 351.3 226 74.8
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 7.6e-95 350.9 224 77.7
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 7.6e-95 350.9 225 75.1
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.7e-94 349.7 224 77.2
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 3.2e-93 345.5 218 76.1
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 9.3e-93 344.0 218 75.7
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 3.5e-92 342.0 224 74.1
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.0e-91 340.5 223 72.2
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 3.9e-91 338.6 322 57.8
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 5.1e-91 338.2 225 71.1
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 6.6e-91 337.8 237 73.4
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 6.6e-91 337.8 304 58.6
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 2.5e-90 335.9 250 66.4
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 2.1e-89 332.8 222 69.4
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 5.3e-88 328.2 225 71.1
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 9.0e-88 327.4 187 84.0
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 5.8e-87 324.7 201 80.6
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.1e-85 320.5 225 66.2
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 7.1e-85 317.8 225 65.3
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 3.9e-83 312.0 224 67.9
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 6.7e-83 311.2 230 69.6
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.9e-82 309.7 224 67.9
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 9.6e-82 307.4 198 76.8
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.3e-81 307.0 192 76.6
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 9.0e-80 300.8 185 76.2
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 1.5e-79 300.1 225 60.4
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.0e-75 287.3 189 74.6
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.9e-69 266.5 168 77.4
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 6.1e-68 261.5 197 65.5
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 3.9e-67 258.8 237 59.1
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 4.1e-64 248.8 163 75.5
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 9.1e-56 221.1 155 66.5
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 6.5e-54 214.9 218 50.0
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 2.6e-42 176.4 119 68.1
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 1.9e-37 160.2 101 76.2
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 9.8e-34 147.9 189 38.6
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 9.5e-29 131.3 96 72.9
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 7.5e-26 121.7 209 34.4
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.7e-09 67.4 74 45.9


User provided reference genes

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