Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 6.6e-50 200.3 93 100.0
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 5.4e-44 180.6 87 95.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 5.4e-44 180.6 87 95.4
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 4.6e-43 177.6 87 92.0
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.9e-42 174.5 87 92.0
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.6e-40 169.1 87 89.7
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.1e-40 168.7 87 90.8
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.4e-39 166.0 87 89.7
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.2e-39 164.1 87 87.4
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-38 162.5 87 87.4
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 1.9e-33 145.6 89 77.5
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 4.1e-28 127.9 121 57.0
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 7.3e-25 117.1 87 66.7
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 8.1e-24 113.6 87 65.5
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 4.4e-22 107.8 87 58.6
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.3e-21 106.3 87 59.8
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.7e-21 105.9 74 68.9
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 4.9e-21 104.4 87 58.6
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 8.4e-21 103.6 75 65.3
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.4e-20 102.8 87 56.3
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.4e-20 102.8 87 57.5
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.9e-20 102.4 87 58.6
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 2.4e-20 102.1 93 52.7
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.6e-19 99.4 87 56.3
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.1e-19 99.0 87 54.0
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 2.7e-19 98.6 92 53.3
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 4.6e-19 97.8 87 57.5
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 6.0e-19 97.4 74 60.8
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 7.8e-19 97.1 73 61.6
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 2.3e-18 95.5 75 64.0
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.9e-18 94.7 90 55.6
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 5.1e-18 94.4 90 55.6
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 6.6e-18 94.0 89 56.2
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.9e-17 92.4 82 54.9
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.9e-17 92.4 87 51.7
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.5e-17 92.0 100 48.0
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.5e-17 92.0 86 54.7
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 3.3e-17 91.7 89 55.1
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 4.3e-17 91.3 88 55.7
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 4.3e-17 91.3 87 51.7
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 5.6e-17 90.9 88 53.4
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 9.6e-17 90.1 87 52.9
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.1e-16 89.0 86 52.3
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.1e-16 89.0 43 93.0
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 2.8e-16 88.6 88 52.3
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.7e-16 87.8 87 48.3
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 6.2e-16 87.4 87 49.4
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 8.1e-16 87.0 89 53.9
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.1e-15 86.7 85 51.8
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.4e-15 86.3 85 50.6
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.4e-15 85.5 76 55.3
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.0e-15 84.7 66 59.1
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 5.2e-15 84.3 88 51.1
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 6.8e-15 84.0 87 46.0
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 6.8e-15 84.0 87 46.0
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 6.8e-15 84.0 87 46.0
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 8.9e-15 83.6 87 48.3
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.2e-14 83.2 77 51.9
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.6e-14 82.0 87 48.3
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 2.6e-14 82.0 87 47.1
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 3.4e-14 81.6 87 48.3
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 4.4e-14 81.3 87 46.0
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 4.4e-14 81.3 92 47.8
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 4.4e-14 81.3 75 50.7
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 4.4e-14 81.3 88 47.7
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 5.8e-14 80.9 87 44.8
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.8e-14 80.9 87 48.3
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 5.8e-14 80.9 75 56.0
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 7.6e-14 80.5 87 46.0
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 7.6e-14 80.5 87 52.9
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 7.6e-14 80.5 87 52.9
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 9.9e-14 80.1 87 46.0
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 9.9e-14 80.1 87 49.4
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.3e-13 79.7 56 60.7
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 1.7e-13 79.3 87 44.8
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 2.2e-13 79.0 87 46.0
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.9e-13 78.6 87 50.6
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.9e-13 78.6 84 42.9
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 8.4e-13 77.0 84 41.7
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.1e-12 76.6 87 44.8
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 1.1e-12 76.6 87 49.4
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.1e-12 76.6 87 44.8
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.4e-12 76.3 88 45.5
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.4e-12 76.3 47 66.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.9e-12 75.9 89 43.8
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 3.2e-12 75.1 94 43.6
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.2e-12 74.7 93 46.2
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 5.4e-12 74.3 51 60.8
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 5.4e-12 74.3 87 43.7
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 5.4e-12 74.3 87 43.7
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 5.4e-12 74.3 90 44.4
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.4e-12 74.3 87 44.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 7.1e-12 73.9 87 42.5
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 7.1e-12 73.9 87 43.7
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 9.3e-12 73.6 87 42.5
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.6e-11 72.8 87 41.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.6e-11 72.8 87 41.4
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.6e-11 72.8 91 41.8
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.6e-11 72.8 88 42.0
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 2.1e-11 72.4 91 45.1
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 2.7e-11 72.0 87 47.1
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 2.7e-11 72.0 75 46.7
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 2.7e-11 72.0 95 42.1
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 4.6e-11 71.2 91 46.2
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 4.6e-11 71.2 89 47.2
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 4.6e-11 71.2 85 47.1
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 6.0e-11 70.9 76 46.1
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 6.0e-11 70.9 87 46.0
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 7.8e-11 70.5 87 43.7
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 7.8e-11 70.5 85 43.5
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.0e-10 70.1 76 46.1
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.0e-10 70.1 72 48.6
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.3e-10 69.7 55 52.7
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.3e-10 69.7 45 64.4
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.3e-10 68.9 87 41.4
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 2.3e-10 68.9 73 43.8
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 3.9e-10 68.2 87 40.2
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 3.9e-10 68.2 87 40.2
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 6.6e-10 67.4 87 44.8
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 8.7e-10 67.0 54 48.1
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-09 66.2 30 96.7
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.9e-09 65.9 31 93.5
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.5e-09 65.5 51 52.9
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 3.3e-09 65.1 111 35.1
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 4.3e-09 64.7 73 46.6
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.3e-09 64.7 73 46.6
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 5.6e-09 64.3 73 46.6
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.6e-09 64.3 73 46.6
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 5.6e-09 64.3 44 59.1
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 5.6e-09 64.3 42 59.5
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.6e-08 62.8 71 42.3
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.1e-08 62.4 86 41.9
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.1e-08 62.4 87 40.2
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.8e-08 62.0 70 44.3
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 3.6e-08 61.6 90 43.3
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 6.2e-08 60.8 86 41.9
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 6.2e-08 60.8 87 39.1
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 8.1e-08 60.5 87 40.2
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 3.1e-07 58.5 43 53.5
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 4.0e-07 58.2 78 41.0
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 6.9e-07 57.4 41 56.1
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 6.9e-07 57.4 87 35.6
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 6.9e-07 57.4 89 33.7
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 9.0e-07 57.0 51 49.0
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 9.0e-07 57.0 51 49.0
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.0e-06 55.8 41 56.1
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 3.4e-06 55.1 46 45.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 4.4e-06 54.7 67 44.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 4.4e-06 54.7 76 44.7
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 9.9e-06 53.5 34 73.5


User provided reference genes

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