Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013462 Solanum tuberosum HOM05D027885 ORTHO05D028488 1.3e-90 336.3 158 100.0
Sopen03g001830 Solanum pennellii HOM05D027885 ORTHO05D028488 3.5e-59 231.9 160 72.5
Sopen03g001800 Solanum pennellii HOM05D027885 ORTHO05D028488 7.0e-36 154.5 116 69.8
CAN.G638.30 Capsicum annuum HOM05D027885 ORTHO05D028488 4.4e-22 108.6 123 52.0
Peaxi162Scf00009g00019 Petunia axillaris HOM05D002913 ORTHO05D003323 1.2e-16 90.5 174 36.8
PGSC0003DMG400018149 Solanum tuberosum HOM05D002913 ORTHO05D003323 8.1e-16 87.8 174 36.2
Solyc03g112900.3 Solanum lycopersicum HOM05D002913 ORTHO05D003323 1.8e-15 86.7 174 36.2
Sopen03g031980 Solanum pennellii HOM05D002913 ORTHO05D003323 4.0e-15 85.5 174 35.6
Nitab4.5_0000514g0140 Nicotiana tabacum HOM05D002913 ORTHO05D003323 2.6e-14 82.8 174 34.5
Nitab4.5_0002403g0030 Nicotiana tabacum HOM05D002913 ORTHO05D003323 4.4e-14 82.0 174 34.5
Solyc07g007450.3 Solanum lycopersicum HOM05D002913 ORTHO05D003323 7.5e-14 81.3 177 34.5
Eucgr.B00303 Eucalyptus grandis HOM05D002913 ORTHO05D003323 1.3e-13 80.5 157 35.7
Sopen07g003500 Solanum pennellii HOM05D002913 ORTHO05D003323 1.3e-13 80.5 177 34.5
CiPaw.12G026900 Carya illinoinensis HOM05D002913 ORTHO05D003323 2.2e-13 79.7 158 34.2
Migut.D01936 Erythranthe guttata HOM05D002913 ORTHO05D003323 3.7e-13 79.0 161 34.2
Phvul.003G201000 Phaseolus vulgaris HOM05D002913 ORTHO05D003323 1.1e-12 77.4 173 33.5
TAR629G1523 Trochodendron aralioides HOM05D002913 ORTHO05D003323 1.4e-12 77.0 159 34.0
Migut.I00001 Erythranthe guttata HOM05D002913 ORTHO05D003323 1.9e-12 76.6 167 33.5
SalBow5G2356 Salvia bowleyana HOM05D002913 ORTHO05D003323 2.4e-12 76.3 165 35.2
Nn4g22742 Nelumbo nucifera HOM05D002913 ORTHO05D003323 3.2e-12 75.9 164 32.3
MSTRG.11462 Avicennia marina HOM05D002913 ORTHO05D003323 4.1e-12 75.5 161 32.9
Hund09442 Selenicereus undatus HOM05D002913 ORTHO05D003323 5.4e-12 75.1 158 34.8
TAR374G0097 Trochodendron aralioides HOM05D000049 ORTHO05D003323 5.4e-12 75.1 159 32.7
unitig_26.g8801 Utricularia gibba HOM05D002913 ORTHO05D003323 5.4e-12 75.1 167 33.5
unitig_750.g28469 Utricularia gibba HOM05D002913 ORTHO05D003323 5.4e-12 75.1 167 33.5
Lalb_Chr07g0182781 Lupinus albus HOM05D002913 ORTHO05D003323 9.2e-12 74.3 149 35.6
MBI16_g27086_MAGBIO Magnolia biondii HOM05D002913 ORTHO05D003323 9.2e-12 74.3 177 32.2
Lalb_Chr13g0297771 Lupinus albus HOM05D002913 ORTHO05D003323 1.2e-11 73.9 146 35.6
Hund02747 Selenicereus undatus HOM05D002913 ORTHO05D003323 1.6e-11 73.6 158 32.9
HanXRQChr16g0504321 Helianthus annuus HOM05D002913 ORTHO05D003323 2.1e-11 73.2 162 35.2
Lsat_1_v5_gn_4_66781 Lactuca sativa HOM05D002913 ORTHO05D003323 2.1e-11 73.2 172 32.6
EL10Ac5g10739 Beta vulgaris HOM05D002913 ORTHO05D003323 2.7e-11 72.8 168 34.5
HPP92_008307 Vanilla planifolia HOM05D002913 ORTHO05D003323 2.7e-11 72.8 173 32.4
Glyma.13G146800 Glycine max HOM05D002913 ORTHO05D003323 3.5e-11 72.4 143 37.8
Oeu057356.2 Olea europaea HOM05D002913 ORTHO05D003323 3.5e-11 72.4 145 36.6
CiPaw.11G025600 Carya illinoinensis HOM05D002913 ORTHO05D003323 4.6e-11 72.0 151 36.4
QL10p010277 Quercus lobata HOM05D002913 ORTHO05D003323 4.6e-11 72.0 168 32.7
QL10p011470 Quercus lobata HOM05D002913 ORTHO05D003323 4.6e-11 72.0 168 32.7
Gohir.D03G077800 Gossypium hirsutum HOM05D002913 ORTHO05D003323 6.0e-11 71.6 177 34.5
Lalb_Chr08g0236551 Lupinus albus HOM05D002913 ORTHO05D003323 6.0e-11 71.6 164 32.9
Thecc.05G189000 Theobroma cacao HOM05D002913 ORTHO05D003323 6.0e-11 71.6 175 34.3
CDE07G1259 Ceratophyllum demersum HOM05D002913 ORTHO05D003323 7.8e-11 71.2 167 32.3
Ciclev10022536m.g Citrus clementina HOM05D002913 ORTHO05D003323 7.8e-11 71.2 161 34.2
Glyma.05G038100 Glycine max HOM05D002913 ORTHO05D003323 7.8e-11 71.2 142 35.2
Lalb_Chr12g0201621 Lupinus albus HOM05D002913 ORTHO05D003323 7.8e-11 71.2 154 34.4
Glyma.17G088900 Glycine max HOM05D002913 ORTHO05D003323 1.0e-10 70.9 154 33.1
MBI10_g28010_MAGBIO Magnolia biondii HOM05D002913 ORTHO05D003323 1.0e-10 70.9 148 35.8
Nn3g16856 Nelumbo nucifera HOM05D002913 ORTHO05D003323 1.0e-10 70.9 151 33.8
Rhsim08G0173200 Rhododendron simsii HOM05D002913 ORTHO05D003323 1.0e-10 70.9 149 34.2
CSS0032737 Camellia sinensis var. sinensis HOM05D002913 ORTHO05D003323 1.3e-10 70.5 149 35.6
CDE06G0765 Ceratophyllum demersum HOM05D002913 ORTHO05D003323 1.3e-10 70.5 167 32.3
Eucgr.K02839 Eucalyptus grandis HOM05D002913 ORTHO05D003323 1.3e-10 70.5 151 36.4
Glyma.06G182000 Glycine max HOM05D002913 ORTHO05D003323 1.3e-10 70.5 143 35.7
Hma1.2p1_0176F.1_g077350 Hydrangea macrophylla HOM05D002913 ORTHO05D003323 1.3e-10 70.5 140 35.7
Lj9A447G31 Lonicera japonica HOM05D002913 ORTHO05D003323 1.3e-10 70.5 139 36.0
VMungo1215G0374 Vigna mungo HOM05D002913 ORTHO05D003323 1.3e-10 70.5 163 33.1
Haze_07507 Corylus avellana HOM05D002913 ORTHO05D003323 1.7e-10 70.1 153 34.6
CsaV3_1G008530 Cucumis sativus L. HOM05D002913 ORTHO05D003323 1.7e-10 70.1 145 34.5
Gorai.003G086200 Gossypium raimondii HOM05D002913 ORTHO05D003323 1.7e-10 70.1 177 33.9
Lj4g0023808 Lotus japonicus HOM05D002913 ORTHO05D003323 1.7e-10 70.1 160 34.4
Nitab4.5_0000025g0580 Nicotiana tabacum HOM05D002913 ORTHO05D003323 1.7e-10 70.1 149 33.6
DCAR_026140 Daucus carota HOM05D002913 ORTHO05D003323 2.3e-10 69.7 148 34.5
HanXRQChr09g0272161 Helianthus annuus HOM05D002913 ORTHO05D003323 2.3e-10 69.7 165 32.7
Sc12g0005290 Simmondsia chinensis HOM05D002913 ORTHO05D003323 2.3e-10 69.7 144 34.7
PGSC0003DMG400030721 Solanum tuberosum HOM05D002913 ORTHO05D003323 2.3e-10 69.7 216 28.7
Cpa.g.sc76.42 Carica papaya HOM05D002913 ORTHO05D003323 3.0e-10 69.3 178 32.0
Cfa019141 Carpinus fangiana HOM05D002913 ORTHO05D003323 3.0e-10 69.3 145 35.2
MELO3C002268.2 Cucumis melo HOM05D002913 ORTHO05D003323 3.0e-10 69.3 145 33.8
Gohir.A02G105801 Gossypium hirsutum HOM05D002913 ORTHO05D003323 3.0e-10 69.3 153 37.3
SGA_v2.0_scaffold25G10836 Striga asiatica HOM05D002913 ORTHO05D003323 3.0e-10 69.3 167 30.5
SGA_v2.0_scaffold90G27906 Striga asiatica HOM05D002913 ORTHO05D003323 3.0e-10 69.3 171 32.2
Zm00001eb359620 Zea mays HOM05D002913 ORTHO05D003323 3.9e-10 68.9 144 34.0
Actinidia19325 Actinidia chinensis HOM05D002913 ORTHO05D003323 5.1e-10 68.6 139 35.3
arahy.Tifrunner.gnm1.ann1.B6Q9P5 Arachis hypogaea HOM05D002913 ORTHO05D003323 5.1e-10 68.6 143 34.3
arahy.Tifrunner.gnm1.ann1.ZQTJ2Z Arachis hypogaea HOM05D002913 ORTHO05D003323 5.1e-10 68.6 143 34.3
Gohir.A08G226900 Gossypium hirsutum HOM05D002913 ORTHO05D003323 5.1e-10 68.6 160 33.8
Oeu035996.1 Olea europaea HOM05D002913 ORTHO05D003323 5.1e-10 68.6 145 32.4
PGR083G1373 Punica granatum HOM05D002913 ORTHO05D003323 5.1e-10 68.6 146 34.2
VMungo1309G0466 Vigna mungo HOM05D002913 ORTHO05D003323 5.1e-10 68.6 141 34.8
Ah.14g078380 Amaranthus hybridus HOM05D002913 ORTHO05D003323 6.6e-10 68.2 163 33.7
AagrBONN_evm.TU.Sc2ySwM_117.3661 Anthoceros agrestis HOM05D002913 ORTHO05D003323 6.6e-10 68.2 152 34.2
Gohir.D08G247300 Gossypium hirsutum HOM05D002913 ORTHO05D003323 6.6e-10 68.2 160 33.8
PSO017G4259 Papaver somniferum HOM05D002913 ORTHO05D003323 6.6e-10 68.2 153 34.0
PSO478G3372 Papaver somniferum HOM05D002913 ORTHO05D003323 6.6e-10 68.2 153 34.0
Prupe.5G172700 Prunus persica HOM05D002913 ORTHO05D003323 6.6e-10 68.2 145 33.8
vmacro21175 Vaccinium macrocarpon HOM05D002913 ORTHO05D003323 6.6e-10 68.2 170 31.2
arahy.Tifrunner.gnm1.ann1.5LU28L Arachis hypogaea HOM05D002913 ORTHO05D003323 8.6e-10 67.8 135 35.6
arahy.Tifrunner.gnm1.ann1.QJ8247 Arachis hypogaea HOM05D002913 ORTHO05D003323 8.6e-10 67.8 135 35.6
MSTRG.9678 Avicennia marina HOM05D002913 ORTHO05D003323 8.6e-10 67.8 135 35.6
Ciclev10022532m.g Citrus clementina HOM05D002913 ORTHO05D003323 8.6e-10 67.8 141 35.5
ECA232G4156 Erigeron canadensis HOM05D002913 ORTHO05D003323 8.6e-10 67.8 156 34.6
Gorai.004G263800 Gossypium raimondii HOM05D002913 ORTHO05D003323 8.6e-10 67.8 160 33.8
Hma1.2p1_0592F.1_g185390 Hydrangea macrophylla HOM05D002913 ORTHO05D003323 8.6e-10 67.8 139 35.3
Sed0017416 Sechium edule HOM05D002913 ORTHO05D003323 8.6e-10 67.8 148 35.8
Zm00001eb157650 Zea mays HOM05D002913 ORTHO05D003323 8.6e-10 67.8 150 32.7
arahy.Tifrunner.gnm1.ann1.Z4FKUN Arachis hypogaea HOM05D002913 ORTHO05D003323 1.1e-09 67.4 134 35.8
Duzib106G1347 Durio zibethinus HOM05D002913 ORTHO05D003323 1.1e-09 67.4 159 32.1
Pp3c2_36100 Physcomitrium patens HOM05D002913 ORTHO05D003323 1.1e-09 67.4 162 32.7
Lsat_1_v5_gn_4_75140 Lactuca sativa HOM05D002913 ORTHO05D003323 1.5e-09 67.0 137 35.0
PSO782G3333 Papaver somniferum HOM05D002913 ORTHO05D003323 1.5e-09 67.0 150 32.7
Phvul.009G178100 Phaseolus vulgaris HOM05D002913 ORTHO05D003323 1.5e-09 67.0 141 34.0
Psat0s2168g0040 Pisum sativum HOM05D002913 ORTHO05D003323 1.5e-09 67.0 137 35.8
vmacro16613 Vaccinium macrocarpon HOM05D002913 ORTHO05D003323 1.5e-09 67.0 144 34.0
ClCG01G013180 Citrullus lanatus HOM05D002913 ORTHO05D003323 1.9e-09 66.6 159 32.1
MD06G1173200 Malus domestica HOM05D002913 ORTHO05D003323 1.9e-09 66.6 149 32.2
SalBow6G5723 Salvia bowleyana HOM05D002913 ORTHO05D003323 1.9e-09 66.6 172 33.7
COL.COLO4_19095 Corchorus olitorius HOM05D002913 ORTHO05D003323 2.5e-09 66.2 135 35.6
COL.COLO4_30054 Corchorus olitorius HOM05D002913 ORTHO05D003323 2.5e-09 66.2 135 35.6
Manes.06G105500 Manihot esculenta HOM05D002913 ORTHO05D003323 2.5e-09 66.2 165 30.9
SEGI_19154 Sequoiadendron giganteum HOM05D002913 ORTHO05D003323 2.5e-09 66.2 134 35.1
AagrBONN_evm.TU.Sc2ySwM_117.27 Anthoceros agrestis HOM05D002913 ORTHO05D003323 3.3e-09 65.9 145 33.1
Ca_14222_v3 Cicer arietinum L. HOM05D002913 ORTHO05D003323 3.3e-09 65.9 137 34.3
Atru.chr9.2485 Acer truncatum HOM05D002913 ORTHO05D003323 4.3e-09 65.5 143 32.9
MD14G1179700 Malus domestica HOM05D002913 ORTHO05D003323 4.3e-09 65.5 140 33.6
TWI75G1893 Tripterygium wilfordii HOM05D002913 ORTHO05D003323 4.3e-09 65.5 141 34.8
Dinv38581 Davidia involucrata HOM05D002913 ORTHO05D003323 5.6e-09 65.1 135 35.6
Mapoly0158s0005 Marchantia polymorpha HOM05D002913 ORTHO05D003323 5.6e-09 65.1 173 31.8
Thecc.03G013300 Theobroma cacao HOM05D002913 ORTHO05D003323 5.6e-09 65.1 140 35.7
Pp3c11_3040 Physcomitrium patens HOM05D002913 ORTHO05D003323 7.3e-09 64.7 114 38.6
Rhsim12G0164800 Rhododendron simsii HOM05D002913 ORTHO05D003323 7.3e-09 64.7 138 34.8
Duzib128G0685 Durio zibethinus HOM05D002913 ORTHO05D003323 9.5e-09 64.3 141 35.5
Lj1g0018366 Lotus japonicus HOM05D002913 ORTHO05D003323 1.2e-08 63.9 139 33.8
Os05g0568100 Oryza sativa ssp. japonica HOM05D002913 ORTHO05D003323 1.2e-08 63.9 134 34.3
Sed0010153 Sechium edule HOM05D002913 ORTHO05D003323 1.2e-08 63.9 143 32.2
SMO358G0626 Selaginella moellendorffii HOM05D002913 ORTHO05D003323 1.2e-08 63.9 140 34.3
Aqoxy3G02912 Aquilegia oxysepala HOM05D002913 ORTHO05D003323 1.6e-08 63.5 154 37.0
Ca_16171_v3 Cicer arietinum L. HOM05D002913 ORTHO05D003323 1.6e-08 63.5 139 34.5
Nitab4.5_0001724g0020 Nicotiana tabacum HOM05D002913 ORTHO05D003323 1.6e-08 63.5 149 30.2
Sabra15G0102100 Salix brachista HOM05D002913 ORTHO05D003323 1.6e-08 63.5 139 33.1
THA.LOC104812982 Tarenaya hassleriana HOM05D002913 ORTHO05D003323 2.1e-08 63.2 135 34.1
TWI23G0235 Tripterygium wilfordii HOM05D002913 ORTHO05D003323 2.1e-08 63.2 141 35.5
AT4G22220 Arabidopsis thaliana HOM05D002913 ORTHO05D003323 2.8e-08 62.8 164 31.1
Medtr3g077720 Medicago truncatula HOM05D002913 ORTHO05D003323 2.8e-08 62.8 137 35.8
PSO198G0102 Papaver somniferum HOM05D002913 ORTHO05D003323 2.8e-08 62.8 142 32.4
Potri.015G077500 Populus trichocarpa HOM05D002913 ORTHO05D003323 2.8e-08 62.8 138 34.8
Carub.0007s1910 Capsella rubella HOM05D002913 ORTHO05D003323 3.6e-08 62.4 164 30.5
AUR62008202 Chenopodium quinoa HOM05D002913 ORTHO05D003323 3.6e-08 62.4 163 29.4
AUR62030955 Chenopodium quinoa HOM05D002913 ORTHO05D003323 3.6e-08 62.4 163 29.4
Potri.012G081700 Populus trichocarpa HOM05D002913 ORTHO05D003323 3.6e-08 62.4 145 34.5
Sp7g20350 Schrenkiella parvula HOM05D002913 ORTHO05D003323 3.6e-08 62.4 164 30.5
SMO301G0069 Selaginella moellendorffii HOM05D002913 ORTHO05D003323 3.6e-08 62.4 115 39.1
TPR.G34242 Trifolium pratense HOM05D002913 ORTHO05D003323 3.6e-08 62.4 136 33.8
FvH4_5g05360 Fragaria vesca HOM05D002913 ORTHO05D003323 4.7e-08 62.0 153 32.7
FAN04G1464 Fragaria x ananassa HOM05D002913 ORTHO05D003323 4.7e-08 62.0 153 32.7
FAN08G3503 Fragaria x ananassa HOM05D002913 ORTHO05D003323 4.7e-08 62.0 153 32.7
FAN13G1561 Fragaria x ananassa HOM05D002913 ORTHO05D003323 4.7e-08 62.0 153 32.7
FAN18G0135 Fragaria x ananassa HOM05D002913 ORTHO05D003323 4.7e-08 62.0 153 32.7
FAN18G3065 Fragaria x ananassa HOM05D002913 ORTHO05D003323 4.7e-08 62.0 153 32.7
BolC1t01598H Brassica oleracea HOM05D002913 ORTHO05D003323 6.2e-08 61.6 164 29.3
CARHR229120 Cardamine hirsuta HOM05D002913 ORTHO05D003323 6.2e-08 61.6 119 34.5
Sabra12G0058500 Salix brachista HOM05D002913 ORTHO05D003323 6.2e-08 61.6 145 34.5
BcaC09g51149 Brassica carinata HOM05D002913 ORTHO05D003323 8.1e-08 61.2 164 29.3
C01p16490 Brassica napus HOM05D002913 ORTHO05D003323 8.1e-08 61.2 164 29.3
Aa31LG6G4330 Aethionema arabicum HOM05D002913 ORTHO05D003323 1.1e-07 60.8 130 33.8
Manes.14G065100 Manihot esculenta HOM05D002913 ORTHO05D003323 1.4e-07 60.5 138 31.9
RcHm_v2.0_Chr7g0193471 Rosa chinensis HOM05D002913 ORTHO05D003323 1.8e-07 60.1 149 32.9
BcaNung03752 Brassica carinata HOM05D002913 ORTHO05D003323 2.3e-07 59.7 167 31.1
BcaB03g11724 Brassica carinata HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
BcaC01g00768 Brassica carinata HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
A01p13610 Brassica napus HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
A08p15620 Brassica napus HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
C03p84070 Brassica napus HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
BolC3t20686H Brassica oleracea HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
BraA01t01302Z Brassica rapa HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
BraA08t33542Z Brassica rapa HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
Thhalv10026418m.g Eutrema salsugineum HOM05D002913 ORTHO05D003323 3.1e-07 59.3 130 33.1
Thhalv10028164m.g Eutrema salsugineum HOM05D002913 ORTHO05D003323 4.4e-06 55.5 117 30.8


User provided reference genes

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