Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.5e-120 433.7 224 100.0
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 3.0e-117 425.2 224 97.8
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 6.7e-117 424.1 224 96.9
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 4.5e-113 411.4 224 94.2
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 3.6e-94 348.6 220 80.5
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 3.6e-94 348.6 220 80.5
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.8e-93 346.3 225 78.2
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 2.3e-93 345.9 220 80.0
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.7e-91 339.7 222 76.1
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.2e-91 339.3 216 76.9
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.8e-91 339.0 224 81.2
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 1.1e-90 337.0 252 72.2
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 3.1e-90 335.5 222 74.8
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.0e-90 334.3 223 79.8
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.0e-88 330.5 217 77.9
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.3e-88 329.3 221 76.5
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 5.0e-88 328.2 219 74.9
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.1e-87 327.0 222 76.1
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.1e-87 327.0 221 76.5
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.1e-87 327.0 218 76.1
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.9e-87 326.2 209 77.5
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.9e-87 326.2 222 76.6
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 4.3e-87 325.1 223 74.4
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 5.6e-87 324.7 222 76.1
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.6e-86 322.0 220 75.0
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 8.0e-86 320.9 226 73.9
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.8e-85 319.7 226 73.5
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.0e-85 318.9 224 73.7
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 4.0e-85 318.5 224 71.4
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 4.0e-85 318.5 224 73.2
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 2.6e-84 315.8 224 74.6
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.6e-84 315.8 224 73.7
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 3.4e-84 315.5 217 71.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 9.8e-84 313.9 223 73.5
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.3e-83 313.5 222 70.3
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.7e-83 313.2 220 72.7
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.7e-83 313.2 207 74.9
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.7e-83 313.2 224 70.5
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.2e-83 312.8 224 71.4
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.2e-83 312.8 219 74.0
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-83 312.8 225 69.8
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 4.9e-83 311.6 224 73.2
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.9e-83 311.6 223 71.7
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 4.9e-83 311.6 223 72.2
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 8.3e-83 310.8 222 71.6
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.1e-82 310.5 210 74.8
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.1e-82 310.5 216 74.1
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.1e-82 310.5 223 70.9
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.1e-82 310.5 224 71.4
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.4e-82 310.1 225 71.1
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.4e-82 310.1 219 72.6
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.8e-82 309.7 219 71.7
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.8e-82 309.7 228 71.1
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 2.4e-82 309.3 225 70.2
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.4e-82 309.3 225 69.3
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 2.4e-82 309.3 245 66.9
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 2.4e-82 309.3 222 69.8
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.2e-82 308.9 217 72.8
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 4.1e-82 308.5 224 71.0
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 4.1e-82 308.5 204 75.0
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 5.4e-82 308.1 216 72.2
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.4e-82 308.1 224 73.2
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 5.4e-82 308.1 216 74.1
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 7.0e-82 307.8 224 73.2
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 7.0e-82 307.8 225 71.1
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 9.2e-82 307.4 204 76.0
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.2e-81 307.0 208 75.0
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.2e-81 307.0 223 71.7
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.6e-81 306.6 222 70.7
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.6e-81 306.6 224 71.4
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 2.0e-81 306.2 214 73.8
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 2.7e-81 305.8 207 74.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.7e-81 305.8 224 70.5
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 5.9e-81 304.7 221 70.6
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 5.9e-81 304.7 218 68.8
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.0e-80 303.9 229 67.7
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.0e-80 303.9 222 70.3
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.0e-80 303.9 219 68.9
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.3e-80 303.5 229 67.2
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-80 303.5 229 67.7
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.7e-80 303.1 213 71.8
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.7e-80 303.1 224 73.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.7e-80 303.1 219 68.5
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.7e-80 303.1 224 71.0
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.3e-80 302.8 220 70.5
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 3.9e-80 302.0 221 70.6
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.0e-80 301.6 216 69.4
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 6.6e-80 301.2 225 68.0
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 8.6e-80 300.8 220 72.3
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.1e-79 300.4 215 71.6
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.5e-79 300.1 225 68.0
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.5e-79 299.3 215 71.2
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 4.3e-79 298.5 215 71.6
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 4.3e-79 298.5 247 65.6
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 7.3e-79 297.7 221 70.1
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.2e-78 297.0 227 67.4
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.6e-78 296.6 215 71.6
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.6e-78 296.6 213 70.4
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.8e-78 295.8 210 71.4
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.8e-78 295.8 224 67.4
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 3.6e-78 295.4 217 71.4
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.8e-77 293.1 213 69.5
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.8e-77 293.1 213 69.5
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-77 293.1 202 73.3
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-77 293.1 202 73.3
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 4.0e-77 292.0 280 59.3
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.5e-76 290.0 213 69.5
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.6e-76 289.3 227 65.2
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.4e-76 288.9 202 72.3
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.7e-75 286.6 222 69.4
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-75 286.2 224 65.2
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 3.7e-75 285.4 216 69.0
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.9e-74 283.1 217 65.4
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.2e-74 282.3 165 89.7
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.7e-73 279.3 316 52.5
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 3.5e-73 278.9 211 65.4
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.3e-72 276.9 169 82.8
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 3.9e-72 275.4 244 62.7
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 8.1e-70 267.7 222 63.1
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 1.1e-69 267.3 222 63.1
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.5e-68 263.5 171 78.9
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.5e-68 263.5 223 64.6
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.3e-67 260.4 211 64.9
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 2.2e-67 259.6 199 63.8
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-65 253.8 163 75.5
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 3.5e-65 252.3 224 65.6
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.6e-64 248.1 231 62.3
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.2e-60 237.3 228 55.3
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.5e-60 236.9 175 63.4
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 2.9e-59 232.6 210 56.2
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 3.7e-59 232.3 224 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 4.1e-58 228.8 218 53.7
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 7.8e-57 224.6 176 66.5
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.0e-56 222.6 206 57.3
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.0e-56 222.6 117 91.5
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.5e-55 220.3 166 67.5
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 5.6e-55 218.4 145 75.9
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 2.8e-54 216.1 120 87.5
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.4e-53 213.8 120 85.8
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 5.2e-53 211.8 253 45.5
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.2e-51 206.5 121 79.3
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 4.9e-51 205.3 172 64.0
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.3e-46 190.7 222 49.5
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 6.2e-46 188.3 217 50.7
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.2e-44 184.1 104 85.6
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 6.4e-43 178.3 143 65.0
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 9.9e-36 154.5 302 35.8
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.9e-36 154.5 189 51.3
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 3.2e-34 149.4 188 43.6
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 7.4e-31 138.3 178 47.2
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 9.0e-29 131.3 81 77.8
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.5e-27 125.2 121 57.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 5.5e-26 122.1 159 50.3
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 1.2e-25 120.9 75 78.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.1e-23 114.4 65 78.5
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 2.5e-23 113.2 67 86.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 3.3e-23 112.8 96 61.5
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 3.4e-20 102.8 81 64.2
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.7e-19 100.5 59 81.4
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 3.8e-19 99.4 109 52.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 5.0e-19 99.0 167 38.3
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.1e-18 97.8 91 54.9
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 1.2e-17 94.4 91 52.7
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.8e-16 90.5 239 33.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 5.1e-16 89.0 158 38.0
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.5e-15 87.4 176 34.1
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 4.8e-14 82.4 89 51.7
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.4e-12 76.3 97 47.4
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.7e-11 73.9 165 33.3
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 3.6e-09 66.2 52 67.3
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 6.1e-09 65.5 44 68.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.0e-08 64.7 66 51.5
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 9.7e-07 58.2 34 67.6
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 3.7e-06 56.2 39 64.1
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 4.8e-06 55.8 44 68.2


User provided reference genes

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