Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.6e-206 721.1 388 100.0
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.9e-200 701.0 388 96.9
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.4e-181 639.8 393 89.8
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.2e-168 595.9 399 84.0
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 7.2e-159 564.3 389 81.0
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.0e-117 425.6 404 64.1
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 4.9e-115 418.7 405 64.0
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.9e-114 416.8 404 65.1
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.2e-107 393.3 405 59.5
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 8.4e-107 391.3 406 61.6
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 1.2e-105 387.5 342 65.2
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.7e-105 386.3 393 58.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-105 385.6 410 57.8
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 4.6e-105 385.6 402 60.0
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.0e-104 384.4 402 59.7
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.3e-103 379.4 348 62.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.3e-102 377.5 405 57.8
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.8e-102 376.3 397 61.2
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 4.8e-102 375.6 390 59.2
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.4e-101 374.0 395 58.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 4.0e-101 372.5 415 58.3
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.5e-100 370.5 405 59.0
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-99 367.5 422 58.1
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.9e-99 365.5 432 54.9
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.9e-98 363.6 394 60.2
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 3.2e-98 362.8 404 56.9
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.2e-97 360.9 405 57.5
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.7e-97 359.8 394 56.9
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.7e-97 359.8 397 59.2
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 3.5e-97 359.4 395 59.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 4.6e-97 359.0 409 55.7
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.3e-96 356.7 410 56.3
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.0e-96 356.3 400 56.2
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.0e-96 356.3 395 56.7
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 5.1e-96 355.5 398 56.3
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 6.6e-96 355.1 432 54.2
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.5e-95 354.0 184 96.2
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 7.3e-95 351.7 409 54.3
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 9.6e-95 351.3 429 54.5
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 3.6e-94 349.4 394 54.3
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.1e-93 347.8 352 59.9
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.4e-93 346.7 417 54.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 6.9e-93 345.1 412 54.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.5e-92 342.4 315 63.2
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.7e-91 340.5 399 57.1
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.4e-90 337.4 393 57.3
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 4.2e-90 335.9 414 53.9
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.2e-90 335.9 413 53.5
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.2e-89 334.3 415 53.3
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.1e-89 333.6 404 56.2
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.9e-88 329.3 398 53.5
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 8.7e-88 328.2 399 53.4
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 2.5e-87 326.6 405 51.1
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 3.3e-87 326.2 388 55.7
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 9.0e-85 318.2 404 52.0
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.4e-84 316.2 406 53.0
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.3e-83 314.3 422 52.8
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 2.2e-83 313.5 400 53.2
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 6.4e-83 312.0 397 51.1
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.1e-82 311.2 447 50.6
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.2e-82 309.3 370 53.2
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 5.5e-82 308.9 386 52.3
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 7.1e-82 308.5 447 50.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.1e-81 307.0 402 51.0
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.6e-81 305.8 370 53.0
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.6e-81 305.8 370 52.4
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 7.9e-81 305.1 410 48.5
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 8.7e-80 301.6 180 95.6
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.9e-79 300.4 354 53.4
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.3e-78 297.7 333 55.6
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.6e-78 297.4 401 50.4
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 4.8e-78 295.8 395 50.9
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 6.2e-78 295.4 393 50.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 5.3e-77 292.4 333 55.0
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 9.0e-77 291.6 406 52.5
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 9.0e-77 291.6 402 48.5
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.5e-76 290.8 403 48.1
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.6e-76 290.0 403 48.1
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 5.8e-76 288.9 408 49.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.7e-75 287.3 391 50.4
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-74 284.6 319 58.9
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 2.5e-74 283.5 404 49.8
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 3.2e-74 283.1 358 50.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.2e-74 283.1 405 49.1
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.0e-72 276.6 396 51.0
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 6.7e-72 275.4 398 49.2
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.1e-71 274.6 395 48.9
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.3e-70 271.2 399 50.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.6e-70 270.8 397 47.4
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.8e-70 270.0 366 51.1
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 5.3e-69 265.8 379 47.8
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.4e-68 263.1 315 51.7
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 3.4e-68 263.1 402 45.5
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.2e-67 260.4 402 48.5
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 3.8e-67 259.6 401 45.9
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 5.0e-67 259.2 402 47.3
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.1e-66 258.1 406 45.3
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.4e-64 251.1 306 52.6
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.3e-62 244.6 399 44.6
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 8.2e-62 241.9 420 44.8
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 9.1e-61 238.4 276 57.2
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 4.5e-60 236.1 281 53.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.8e-59 233.0 414 42.5
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 4.2e-58 229.6 330 49.4
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 5.5e-58 229.2 263 59.3
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 7.2e-58 228.8 296 52.4
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.9e-56 223.0 388 44.3
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 1.5e-55 221.1 392 44.4
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 4.4e-55 219.5 384 44.3
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.7e-55 219.2 437 40.0
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 1.3e-54 218.0 390 44.6
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.8e-54 216.9 375 45.9
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 6.3e-54 215.7 396 44.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 8.2e-54 215.3 381 45.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 8.2e-54 215.3 381 45.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 8.2e-54 215.3 321 49.2
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 8.2e-54 215.3 394 45.2
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.4e-53 214.5 393 45.3
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.5e-52 211.1 371 45.3
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.0e-51 208.4 397 42.6
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.0e-51 208.4 285 50.9
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.0e-51 208.4 285 50.9
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.6e-49 201.1 216 58.3
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 4.1e-45 186.4 302 44.4
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 3.4e-39 166.8 388 37.6
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 4.4e-39 166.4 289 41.9
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 2.2e-38 164.1 191 56.0
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 2.4e-37 160.6 288 42.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 4.2e-34 149.8 232 50.0
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-33 147.1 125 61.6
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.6e-31 140.6 118 70.3
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.7e-30 136.7 357 36.7
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 2.4e-29 134.0 106 69.8
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.0e-27 126.3 213 46.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.0e-27 126.3 213 46.0
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.6e-25 120.2 186 45.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.8e-24 117.9 194 45.4
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.3e-22 111.7 282 34.8
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.7e-14 84.7 64 75.0
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-13 82.0 206 35.9
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.9e-13 81.3 215 35.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-13 80.1 215 35.3
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 4.1e-13 80.1 113 49.6
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.4e-13 79.7 215 35.3
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.4e-13 79.7 181 37.0
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.0e-13 79.3 215 35.3
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 4.6e-12 76.6 216 31.5
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 2.1e-09 67.8 83 53.0
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 4.7e-09 66.6 160 38.8
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 6.2e-09 66.2 71 63.4
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.8e-08 62.8 182 32.4
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 2.2e-06 57.8 42 76.2
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 3.7e-06 57.0 147 32.7


User provided reference genes

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